GgaEX1016160 @ galGal4
Exon Skipping
Gene
ENSGALG00000001513 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr17:8355695-8357563:+
Coord C1 exon
chr17:8355695-8355848
Coord A exon
chr17:8356643-8356863
Coord C2 exon
chr17:8357387-8357563
Length
221 bp
Sequences
Splice sites
3' ss Seq
TTCACTTTGCATTTCTGCAGGTC
3' ss Score
10.44
5' ss Seq
AAAGTAAGG
5' ss Score
6.6
Exon sequences
Seq C1 exon
GCTCACATGAGAGCTCAAAAAGCAAGTAAAGAACAGCAGATTGAGGTAATGAACAAACAGTACAAACAGCTCGAGAGTCGCCTGGATGAAATGCTTTCTAGGATTGCTAAGGAAACTGAGGAAATCAAGGACTTGGAACAGCAGCTCACTGATG
Seq A exon
GTCAAATAGCAACAAACGAAGCACTGAAAAGGGATTTAGAAAGCATCATAATTGGATTACAGGAATACCTGGAAAGCGTTAAGCATCAAGCAAAACAGGCCAATGATGAATGTAAGGAGTTGCAGAAGGATAAAGAATCTTTGTTTCAGAGACTGGCAGATCTAGAGGATGAAAGAAATAGCCTGAAAATAGTTGTCATGGATGCCGAAAATATGAGAAAA
Seq C2 exon
GAAATAGCAATGCTTGAAGGCGCACTTCAAGAGCAGCGAGAAATAAATGAATCACTCAGAGAAGGACAAGGGGATGTCAGTGCCTACGAGGCTGAACTGGAAGCCCAGCTAAGAGAAAGAGACACTGAAGCCAATCAGCAAAAGGAAGAATTGGAAAGGCTGAAACAACTCAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001513-'22-20,'22-19,24-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.385 A=0.243 C2=0.712
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCACATGAGAGCTCAAAAAGCA
R:
TGCTGATTGGCTTCAGTGTCT
Band lengths:
293-514
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]