BtaEX0009469 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011417 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr8:112448015-112452580:+
Coord C1 exon
chr8:112448015-112448168
Coord A exon
chr8:112449178-112449398
Coord C2 exon
chr8:112452404-112452580
Length
221 bp
Sequences
Splice sites
3' ss Seq
CCTTTCTCTGTCTTGCTTAGGCC
3' ss Score
10.83
5' ss Seq
AAGGTGTGC
5' ss Score
6.3
Exon sequences
Seq C1 exon
TGCCATATGAAGGCTCAGAAAAGGGGTAAAGAACAACAATTTGACATTATGAACAAGCAGTACAAACAGCTTGAGAGCCGTTTGGACGAAATACTTTCTAGAATTGCTAAAGAAACTGAAGAGATTAAGGACCTTGAACAACAGCTTACTGAAG
Seq A exon
GCCAGATAGCAGCAAATGAAGCCCTGAAGAAGGACTTAGAAGGCGTCATCAGTGGGCTGCAGGAATACCTGGGGACTGTGAAGGGCCAGGCCGCGCAGGCCCAGAACGAGTGCAGAAGGCTGCAGGATGAGAAAGAGGCGCTGCTGCAGAGCTTGGCCCAGGTCGAGCAGGAAAGGGACCAGCTGGAAATAGTCGCCTTAGATGCAGAAAATATGAGGAAG
Seq C2 exon
GAGCTTGCAGAGCTAGAAAGCGCCCTTGCAGAGCAGCATGAGGTGAACGCGTCCCTGCAGCAGACCCACGGAGACCTCAGTGCCTACGAGGCTGAGTTAGAGGCGCAGCTGAGGATGAAGGATGCTGAAGCCAGCCAGCTCAAAAAAGAGCTGGGAGAACTAGCAAGGCTCAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011417_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.308 A=0.122 C2=0.593
Domain overlap (PFAM):
C1:
PF138511=GAS=PU(35.9=71.2)
A:
PF138511=GAS=PD(63.1=87.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAAGGCTCAGAAAAGGGGT
R:
TTTTTGAGCTGGCTGGCTTCA
Band lengths:
294-515
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development