MmuEX6100821 @ mm9
Exon Skipping
Gene
ENSMUSG00000057110 | Cep110
Description
centrosomal protein 110 [Source:MGI Symbol;Acc:MGI:1889576]
Coordinates
chr2:34989478-34993328:+
Coord C1 exon
chr2:34989478-34989631
Coord A exon
chr2:34990988-34991208
Coord C2 exon
chr2:34993152-34993328
Length
221 bp
Sequences
Splice sites
3' ss Seq
TCTGTTTTTATCATGCATAGGCC
3' ss Score
7.91
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
TCCCACATGAAAGCCCAGAAGAGGGGCAAAGAACAGCAGCTTGACATTATGAACAGACAGTACACACAGCTCGAAAGCCGCCTGGACGAGATACTTTGTAGAATTGCCAAAGAGACTGAAGAGATCAAGGACCTTGAACAGCAGCTTACAGATG
Seq A exon
GCCAGATAGCAGCAAACGAAGCTCTGAAGAAGGATTTAGAAGGTGTCATCAGTGGGTTGCAAGAGTACCTTGGAACCATCAAAGGCCAGGCAACTCAGGCCCAGAATGAGTGCAGGAAGCTACAGGATGAGAAAGAGACATTGCTGCAGAGACTGACAGAAGTCCAGCAGGAGAAGGAGGAACTTGAACTCATTGCCATGGATGCAGAAAATATGAGGAAG
Seq C2 exon
GAGCTTGCAGAGCTAGAAAGTGCCCTCCAGGAACAGCATGAGGTGAATGCATCCCTACAGCAAGCCCAGGGAGATCTCAGCGCCTATGAAACTGAGCTAGAGACTCAGTTAAAACTAAAAGACGCTGAAACCAGCCAGCTCAAGCAAGAGTTGGAAAAACTCCTAAGGCGTACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057110-'17-19,'17-17,19-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.373 A=0.334 C2=0.635
Domain overlap (PFAM):
C1:
PF059116=DUF869=PU(73.1=98.0),PF138511=GAS=PU(41.3=90.0)
A:
PF059116=DUF869=PD(25.4=23.0),PF138511=GAS=PD(57.8=85.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGAAGAGGGGCAAAGAAC
R:
AACTCTTGCTTGAGCTGGCTG
Band lengths:
293-514
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: