GgaEX1016160 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr17:9058344-9061302:+
Coord C1 exon
chr17:9058344-9058396
Coord A exon
chr17:9060382-9060602
Coord C2 exon
chr17:9061126-9061302
Length
221 bp
Sequences
Splice sites
3' ss Seq
TTCACTTTGCATTTCTGCAGGTC
3' ss Score
10.44
5' ss Seq
AAAGTAAGG
5' ss Score
6.6
Exon sequences
Seq C1 exon
GGGTGGGGCGTCCTGCACGTGATCCCGAAGGAAGAAAAGACAAAGGCAAAGCT
Seq A exon
GTCAAATAGCAACAAACGAAGCACTGAAAAGGGATTTAGAAAGCATCATAATTGGATTACAGGAATACCTGGAAAGCGTTAAGCATCAAGCAAAACAGGCCAATGATGAATGTAAGGAGTTGCAGAAGGATAAAGAATCTTTGTTTCAGAGACTGGCAGATCTAGAGGATGAAAGAAATAGCCTGAAAATAGTTGTCATGGATGCCGAAAATATGAGAAAA
Seq C2 exon
GAAATAGCAATGCTTGAAGGCGCACTTCAAGAGCAGCGAGAAATAAATGAATCACTCAGAGAAGGACAAGGGGATGTCAGTGCCTACGAGGCTGAACTGGAAGCCCAGCTAAGAGAAAGAGACACTGAAGCCAATCAGCAAAAGGAAGAATTGGAAAGGCTGAAACAACTCAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023482-'2-6,'2-4,4-6=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.299 C2=0.771
Domain overlap (PFAM):
C1:
NA
A:
PF123253=TMF_TATA_bd=PD(16.9=13.5),PF138511=GAS=PD(57.6=91.9)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCACGTGATCCCGAAG
R:
CTGAGTTGTTTCAGCCTTTCCA
Band lengths:
215-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]