MmuEX6100821 @ mm10
Exon Skipping
Gene
ENSMUSG00000057110 | Cntrl
Description
centriolin [Source:MGI Symbol;Acc:MGI:1889576]
Coordinates
chr2:35133958-35137808:+
Coord C1 exon
chr2:35133958-35134111
Coord A exon
chr2:35135468-35135688
Coord C2 exon
chr2:35137632-35137808
Length
221 bp
Sequences
Splice sites
3' ss Seq
TCTGTTTTTATCATGCATAGGCC
3' ss Score
7.91
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
TCCCACATGAAAGCCCAGAAGAGGGGCAAAGAACAGCAGCTTGACATTATGAACAGACAGTACACACAGCTCGAAAGCCGCCTGGACGAGATACTTTGTAGAATTGCCAAAGAGACTGAAGAGATCAAGGACCTTGAACAGCAGCTTACAGATG
Seq A exon
GCCAGATAGCAGCAAACGAAGCTCTGAAGAAGGATTTAGAAGGTGTCATCAGTGGGTTGCAAGAGTACCTTGGAACCATCAAAGGCCAGGCAACTCAGGCCCAGAATGAGTGCAGGAAGCTACAGGATGAGAAAGAGACATTGCTGCAGAGACTGACAGAAGTCCAGCAGGAGAAGGAGGAACTTGAACTCATTGCCATGGATGCAGAAAATATGAGGAAG
Seq C2 exon
GAGCTTGCAGAGCTAGAAAGTGCCCTCCAGGAACAGCATGAGGTGAATGCATCCCTACAGCAAGCCCAGGGAGATCTCAGCGCCTATGAAACTGAGCTAGAGACTCAGTTAAAACTAAAAGACGCTGAAACCAGCCAGCTCAAGCAAGAGTTGGAAAAACTCCTAAGGCGTACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057110-'26-34,'26-28,31-34=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.369 A=0.324 C2=0.663
Domain overlap (PFAM):
C1:
PF138511=GAS=PU(36.3=98.0),PF0163315=Choline_kinase=PU(31.0=80.0)
A:
PF138511=GAS=FE(54.1=100),PF0163315=Choline_kinase=FE(56.6=100)
C2:
PF138511=GAS=PD(8.1=64.7),PF0163315=Choline_kinase=PD(10.9=82.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGAAGAGGGGCAAAGAAC
R:
AACTCTTGCTTGAGCTGGCTG
Band lengths:
293-514
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types