DreEX0002909 @ danRer10
Exon Skipping
Gene
ENSDARG00000088492 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr5:62741960-62745374:-
Coord C1 exon
chr5:62745221-62745374
Coord A exon
chr5:62744257-62744477
Coord C2 exon
chr5:62741960-62742136
Length
221 bp
Sequences
Splice sites
3' ss Seq
AAATATGTCTACTCTTTCAGGTC
3' ss Score
9.19
5' ss Seq
AAGGTAGTT
5' ss Score
6.44
Exon sequences
Seq C1 exon
ACCCATGTGAAGGCTCAGTTGTCCAGGAAGTCACAGCTGCTGGCCATCATGAGCAGAAAGCACCAGGAGCTGGAGCGCAGGCTGGATGACATGATCACACGCATCCACAAGGAGACCGAGGAGATCAAAGATCTGGAGCAGCAGCTTACTGATG
Seq A exon
GTCAGATAGCTGCTAATGAAGCGCTCAAACGTGACCTTGAGGGCATCATCTCAGGTCTTCAGGAGTATCTGCGCGGTGTGAAGGACCAAGCACGGAGAGCCCAATCAGATTGCAGACGTCTACAGAGGGAAAAAGACACTCTGCAGCACCTCTTAGACATGAAGGAGCAGGAATTCACACAGCTGGAGAATAAAGCCCTGAGTGCTGAAATCACACAGAAG
Seq C2 exon
GAGCTGGAGCTACAGAAGCAGGAGTTTGACAATCTGATGAAGGAGAATGAAGAACTGAAACGAGCACGAGGACAGGTCAGTGAATATGAGGCAGAGCTGGAGAGCCAACTACAGCAGAGAGATACTGAAGCCACACAGCTGAAGGAGGAGCTGGACAGACTGCGTCGACTCACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000088492-'16-18,'16-17,17-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.577 A=0.365 C2=0.746
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGGCTCAGTTGTCCAGGA
R:
AGTCTGTCCAGCTCCTCCTTC
Band lengths:
308-529
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]