RnoALTA0009634-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000022015 | Cntrl
Description
centriolin [Source:RGD Symbol;Acc:1305317]
Coordinates
chr3:14327735-14329309:+
Coord C1 exon
chr3:14327735-14327888
Coord A exon
chr3:14329089-14329093
Coord C2 exon
chr3:14329094-14329309
Length
5 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGA
5' ss Score
8.94
3' ss Seq
TCTGTTTTCATTGTGCGTAGGCC
3' ss Score
9.31
Exon sequences
Seq C1 exon
TCCCATATGAAAGCCCAGAAGAGGGGTAAAGAGCAGCAGCTCGACATTATGAACAAGCAGTACACACAACTGGAAAGCCGCCTGGACGAGATACTTTGTAGGATTGCTACAGAGACTGAAGAGATCAAGGACCTTGAACAGCAGCTTACTGACG
Seq A exon
GCCAG
Seq C2 exon
ATAGCAGCAAATGAAGCTCTGAAGAAGGATTTGGAAGGCGTCATCAGTGGGTTGCAAGAGTACCTGGGGACCATCAAAGGCCAGGCAGCTCAGGCCCAAAATGAGTGCAGGAAGCTGCAGGATGAGAAAGAGACACTGCTGCAGAGACTGACAGAAGTCAAGCAGGAGAAGGACGAACTGGAAATAGTTGCCATGGATGCAGAGAATATGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022015-20-28,20-27-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.385 A=NA C2=0.304
Domain overlap (PFAM):
C1:
PF138511=GAS=PU(34.3=67.3)
A:
NA
C2:
PF138511=GAS=PD(64.7=89.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGACCTTGAACAGCAGCT
R:
CCAGGTACTCTTGCAACCCAC
Band lengths:
96-101
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]