MmuALTA0004162-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000029516 | Cit
Description
citron [Source:MGI Symbol;Acc:MGI:105313]
Coordinates
chr5:116429771-116431821:+
Coord C1 exon
chr5:116429771-116429878
Coord A exon
chr5:116431659-116431703
Coord C2 exon
chr5:116431704-116431821
Length
45 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
ATCTCTGTTTCCATTGCTAGGGT
3' ss Score
9.02
Exon sequences
Seq C1 exon
GTTCTCTACTCTCACGAGAAAGTGAAAATGGAAGGCACAATCTCTCAGCAAACCAAACTCATTGATTTCCTGCAAGCCAAAATGGACCAGCCTGCTAAAAAGAAAAAG
Seq A exon
GGTTTATTTAGTCGACGGAAAGAGGACCCTGCTTTGCCCACACAG
Seq C2 exon
GTTCCTCTGCAGTACAATGAGCTGAAGCTAGCCCTGGAAAAGGAGAAAGCCCGATGCGCGGAGCTGGAGGAGGCCCTTCAGAAGACCCGCATCGAACTCCGCTCTGCGCGGGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029516-46-46,46-45-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.194 A=NA C2=0.442
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGCAAGCCAAAATGGACC
R:
GAGTTCGATGCGGGTCTTCTG
Band lengths:
140-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: