GgaALTA0003834-2/3 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000007354 | CIT
Description
citron rho-interacting serine/threonine kinase [Source:HGNC Symbol;Acc:HGNC:1985]
Coordinates
chr15:9622245-9623197:+
Coord C1 exon
chr15:9622245-9622352
Coord A exon
chr15:9623035-9623079
Coord C2 exon
chr15:9623080-9623197
Length
45 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
CTGTGTGTTTCTGTTGCTAGGGC
3' ss Score
9.59
Exon sequences
Seq C1 exon
GTTCTCTATTCCCATGAAAAAGTGAAAATGGAGGGCACTATTTCTCAGCAAACCAAACTCATTGATTTCCTGCAAGCAAAGATGGACCAGCCAGCGAAAAAGAAAAAG
Seq A exon
GGCCTGTTTAGTCGGCGGAAAGAGGACCCTTCTTTACCCACACAG
Seq C2 exon
GTTCCCCTGCAATACAATGAGCTGAAAGTGGCACTGGAGAAGGAGAAAGCTCGTTCTGCTGAGCTGGAGGAGGCTCTACAGAAAACACGCATTGAGCTCAGATCTGCTCGTGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007354-51-50,51-49,51-48-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.194 A=NA C2=0.800
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACCAGCCAGCGAAAAAGAA
R:
TCCTCACGAGCAGATCTGAGC
Band lengths:
141-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]