RnoALTA0009039-3/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000001143 | Cit
Description
citron rho-interacting serine/threonine kinase [Source:RGD Symbol;Acc:70878]
Coordinates
chr12:46358977-46361027:-
Coord C1 exon
chr12:46360920-46361027
Coord A exon
chr12:46359083-46359139
Coord C2 exon
chr12:46358977-46359082
Length
57 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
ATCTCTGTTTCCATTGCTAGGGT
3' ss Score
9.02
Exon sequences
Seq C1 exon
GTTCTCTACTCACACGAGAAGGTGAAAATGGAAGGCACTATTTCTCAACAAACCAAACTCATTGATTTCCTGCAAGCCAAAATGGACCAGCCCGCTAAAAAGAAAAAG
Seq A exon
GGTTTATTTAGTCGACGGAAAGAGGACCCTGCTTTGCCCACACAGGTTCCTCTGCAG
Seq C2 exon
TACAATGAGCTGAAGCTCGCCCTGGAAAAGGAGAAAGCGCGCTGTGCGGAGCTGGAGGAAGCCCTTCAGAAGACCCGCATCGAACTCCGGTCCGCACGGGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001143-60-52,60-51,60-50-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.201 A=NA C2=0.366
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCATTGATTTCCTGCAAGCCA
R:
GAGTTCGATGCGGGTCTTCTG
Band lengths:
139-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]