GgaINT0008827 @ galGal4
Intron Retention
Gene
ENSGALG00000007354 | CIT
Description
citron rho-interacting serine/threonine kinase [Source:HGNC Symbol;Acc:HGNC:1985]
Coordinates
chr15:9622245-9623197:+
Coord C1 exon
chr15:9622245-9622352
Coord A exon
chr15:9622353-9623034
Coord C2 exon
chr15:9623035-9623197
Length
682 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
CTGTGTGTTTCTGTTGCTAGGGC
3' ss Score
9.59
Exon sequences
Seq C1 exon
GTTCTCTATTCCCATGAAAAAGTGAAAATGGAGGGCACTATTTCTCAGCAAACCAAACTCATTGATTTCCTGCAAGCAAAGATGGACCAGCCAGCGAAAAAGAAAAAG
Seq A exon
GTGGGTGAAAGAGGTTTGAGAGTCATAGAACTAAATGATGGCTTTCTATATAGCTATGTGCTGTGATTTCAAAATTTTCTGTTTTATCTTTCTTTATGTGTAGCATAGATGTGTCATCTAAGCATTCCAAGTCACTGAGGACAAGCTTTGCTAGGCAGAAAGTCTTTCATGTGGCCTTTCCAGTACTTTATTATTCCCAACCCAATAGCTACACGTCAGTGAGGTTGTTGTGGGAATGTAGAGCTTTAACCATGTTTTTTTTTTCCTTTTAACAGTAAGTATGTATGTGTGTATGAACATATTGTGTATCTAGAGTGGCTGTCTTTTAGCATAGGATTGATTAGTCAGGTGATGTGACTTGTGTCACATTGTCATAAGCAGTTCTGTCATTTTGAATTAAGTAATTTAAATTAATTTTAACCACCTATTTTGAGATCCTCTGTTTAGATGCTTTCGGAAACTCAGCATGTGAGTACTAGCAGGTAACGTATGTCCCCCTTTAAATTAATCCATATCTCAACATTTTCTCTCCAGTGCCAATATGAACTAAAAATCCATCCTTACTTATATCAGAATTACCATTAGGCCCTCTGGCCGGACTGCCACTAGCTAGTTTCACTTTGCCTAGTTTAAGCCATCTCTTACTAGGAGTTAGGAGTTGTCTGTGTGTTTCTGTTGCTAG
Seq C2 exon
GGCCTGTTTAGTCGGCGGAAAGAGGACCCTTCTTTACCCACACAGGTTCCCCTGCAATACAATGAGCTGAAAGTGGCACTGGAGAAGGAGAAAGCTCGTTCTGCTGAGCTGGAGGAGGCTCTACAGAAAACACGCATTGAGCTCAGATCTGCTCGTGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007354:ENSGALT00000011895:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.194 A=NA C2=0.800
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCTCTATTCCCATGAAAAAGTGA
R:
TTCCTCACGAGCAGATCTGAG
Band lengths:
270-952
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]