RnoINT0036614 @ rn6
Intron Retention
Gene
ENSRNOG00000001143 | Cit
Description
citron rho-interacting serine/threonine kinase [Source:RGD Symbol;Acc:70878]
Coordinates
chr12:46358977-46361027:-
Coord C1 exon
chr12:46360920-46361027
Coord A exon
chr12:46359140-46360919
Coord C2 exon
chr12:46358977-46359139
Length
1780 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
ATCTCTGTTTCCATTGCTAGGGT
3' ss Score
9.02
Exon sequences
Seq C1 exon
GTTCTCTACTCACACGAGAAGGTGAAAATGGAAGGCACTATTTCTCAACAAACCAAACTCATTGATTTCCTGCAAGCCAAAATGGACCAGCCCGCTAAAAAGAAAAAG
Seq A exon
GTGAGTTTTGGCGCTCAACAGTAGAAGCGGGTGAGCTAGCTCCACAACCCACGAATCGGTAGATGCCACTGTGATAAATAACCATGGAAACAGAAGAGAAGCATGCGTTTTTGTTTGTTCTGGGTTGAACTCTATCAGAGCATAACCGGAACGGCCTTTATCACGGGACCATTGATCAAGACCGACAGATAAAACTGCTTTCACTCCTGTGGGGAAGCTGGGATCGGGCAGGGCGTCATCTGCTGAGGGAATGGGCTTATACGGAGAGGTTGAATGTTAGGTCTCTCACGTGGGTCAGGTCACGTGTGTCTGAGAGTTTAGCAGGTCACATGCCTGGGACTCTTTGGCATGTGTCACCTCCGTGGGTCTCCAGGAAGTACTCGGGGTTGATCTAATCCAGTGCTTTTAGTTAGCTTTATGCTTTGATCCTTTTCAAGACAGAATTTTGCAATGCAGTTCAGGCTGGACCTAAAACCCATAATGGTTTTGCCTTTGGAGCACTGGGACTGTAGGTGCGCGCTCCCATAGTCCCGTGCAGTTAAGTGGCTCACAGATGCAGGAAGTTGAAATGGCCTGCTTAAAATGTGACTAGACAGCTGTCTTCACCAGCGCTGCACTCCGCTTTAAACCGTAACAATGGGGTGAAACCCTAGATGAAAGGCCAGCTGTGACAGGAGGCCCTAGGCTCAGCCCCAGTGTGGAGTGACCAGGTCCTAAGAGGGTCCCTGTGAGGAGATGGCTTTCCATAAGCCCAGCCTGAGGGCTCCCCAACTGCTGTAGCTCTCGTCCTAGCACAGGCCAATCAATCTGAGCGCCAGGAAGGTCTCTGAGGGCTTGGCAGTTTCCTTCCCAGGGTCTTAGCACACTGTGGCAATCACGGCAGCAGTGTTAAGGGAAAGGACGGACCTGATGACCTAGAATAGCCAGAGGAAGGGACCAGAGGAACAATGCCCACAGTTGGCCTCTGTGATCCTTTGGTCACGTCTACTGCTCAGACAGTGCACACAGTTCCCTGAGGCTGTGTCTGACTAACTCCTGGTCACGGGAGGGTTAACACTTACCATGTTACCGTATATTCTTGCTAAAGCTCATGATATTTAACCTTTTTTTTTTTTATTCTGGCAGCGGACTATTGTCTGGTTGTGTCATTGATGTTAGGATGTTTTGCGTTCGTTTTCCTGTTAATTGATTTTTCTTTTGTCAGACGCGTAATTCCATTTTTACTCTTCTGTGTACAGTAACTTTCTGTTGGTATTTTTTTTTTTTTAGTAAGCCCTTTGTTTCGATATCATCTTAGCATTTGTTTTCAATTTTTGCTTTCTTTTTTAAAAAAGAAAAACAACCCTCCCCCTCCCACTCCCCATGTCTTGTCACCAAGCACCACGAGACAAGTTCAAAGGCAAGATGGACCTCTGACCCATAACCACCTCTCCCAGCTCCATACTCCATCCATCCTGATTCCATTTTTTGAGGGGCAAAGACTCCCGGGAAATGGCTCTCCTGTCTTGGGAATGCTAAAGGAAGAGGTGGTGGCAGTTGCAGCATCTTTAACCCTCTTGGTGAAAACCTCTGAACCCGCTCTTTTTTACAGCTGACCGGAATGGGCTGAGGCTCAGCCTCCCCTCCCCCCTCCCCTTCATTTGCCATTTCCCCCCAAACACACTTACAGTGAGTATATGCCTGGCCTTGGTGGCCTGCTCCTCCCGTGTCAGCTTCTCCTTTAGCCTGGGTCCAGTGTCAGTTTCTAGGAGTTAGGAGATATCTCTGTTTCCATTGCTAG
Seq C2 exon
GGTTTATTTAGTCGACGGAAAGAGGACCCTGCTTTGCCCACACAGGTTCCTCTGCAGTACAATGAGCTGAAGCTCGCCCTGGAAAAGGAGAAAGCGCGCTGTGCGGAGCTGGAGGAAGCCCTTCAGAAGACCCGCATCGAACTCCGGTCCGCACGGGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001143:ENSRNOT00000041281:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.201 A=NA C2=0.421
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTCTACTCACACGAGAAGGTGA
R:
CTTCCTCCCGTGCGGACC
Band lengths:
270-2050
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]