GgaINT0008827 @ galGal3
Intron Retention
Gene
ENSGALG00000007354 | CIT
Description
NA
Coordinates
chr15:9888598-9889550:+
Coord C1 exon
chr15:9888598-9888705
Coord A exon
chr15:9888706-9889432
Coord C2 exon
chr15:9889433-9889550
Length
727 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
ACCCTTCTTTACCCACACAGGTT
3' ss Score
9.13
Exon sequences
Seq C1 exon
GTTCTCTATTCCCATGAAAAAGTGAAAATGGAGGGCACTATTTCTCAGCAAACCAAACTCATTGATTTCCTGCAAGCAAAGATGGACCAGCCAGCGAAAAAGAAAAAG
Seq A exon
GTGGGTGAAAGAGGTTTGAGAGTCATAGAACTAAATGATGGCTTTCTATATAGCTATGTGCTGTGATTTCAAAATTTTCTGTTTTATCTTTCTTTATGTGTAGCATAGATGTGTCATCTAAGCATTCCAAGTCACTGAGGACAAGCTTTGCTAGGCAGAAAGTCTTTCATGTGGCCTTTCCAGTACTTTATTATTCCCAACCCAATAGCTACACGTCAGTGAGGTTGTTGTGGGAATGTAGAGCTTTAACCATGTTTTTTTTTTCCTTTTAACAGTAAGTATGTATGTGTGTATGAACATATTGTGTATCTAGAGTGGCTGTCTTTTAGCATAGGATTGATTAGTCAGGTGATGTGACTTGTGTCACATTGTCATAAGCAGTTCTGTCATTTTGAATTAAGTAATTTAAATTAATTTTAACCACCTATTTTGAGATCCTCTGTTTAGATGCTTTCGGAAACTCAGCATGTGAGTACTAGCAGGTAACGTATGTCCCCCTTTAAATTAATCCATATCTCAACATTTTCTCTCCAGTGCCAATATGAACTAAAAATCCATCCTTACTTATATCAGAATTACCATTAGGCCCTCTGGCCGGACTGCCACTAGCTAGTTTCACTTTGCCTAGTTTAAGCCATCTCTTACTAGGAGTTAGGAGTTGTCTGTGTGTTTCTGTTGCTAGGGCCTGTTTAGTCGGCGGAAAGAGGACCCTTCTTTACCCACACAG
Seq C2 exon
GTTCCCCTGCAATACAATGAGCTGAAAGTGGCACTGGAGAAGGAGAAAGCTCGTTCTGCTGAGCTGGAGGAGGCTCTACAGAAAACACGCATTGAGCTCAGATCTGCTCGTGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007354:ENSGALT00000011895:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.194 A=NA C2=0.550
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCTCTATTCCCATGAAAAAGTGA
R:
TCCTCACGAGCAGATCTGAGC
Band lengths:
224-951
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]