MmuALTA0004371-1/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000038070 | Cntln
Description
centlein, centrosomal protein [Source:MGI Symbol;Acc:MGI:2443104]
Coordinates
chr4:84695508-84709259:+
Coord C1 exon
chr4:84695508-84696040
Coord A exon
NA
Coord C2 exon
chr4:84709085-84709259
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
TTGTTTTGTTTTTAAAGCAGTGA
3' ss Score
3.51
Exon sequences
Seq C1 exon
GAGAAAAACTCAAGAAAATTAAAAGAAGAGAGTAAGAGATTAAAGAAAGAGAATGATTTCCTTAAATCCCACTTAAAACACTATCAAGAAGACTCGGAGGCGAGAGAGAAGGAGCTAGAACAACTACTGAGGGTGAGCAAAGATGTAGAACATGACAAAAGTGAGCTTCAAACAAAAATCACTGCTCTGGAGACAGAAGTCACTACCCTGAGGAGACAAGTGACAGAAGCTAAGGCTTTGAGAGGCAAAGATGAAGAGGTGGTGTGCCCAGAGGAAAGAGCACACCGCCCAACAGACAAAGCTAAATCTGAGATGGCCACCACAGATGTGAGAGCCCGGCGCTGTGACTGCAAGACAGCCACTACCAAGGTGAAATTTAAAGCTGCCAAGAGAAAGTGCTCAGTGGGTCGCCACCACACAGTTCTCAATCACTCCATCAAGGTTATGAGCCACGTGGAGAACCTCAGCAAGGACGGCTGGGAGGATGTGAGTGAAGGCAG
Seq A exon
NA
Seq C2 exon
TGATTCTGAAACACAAACCTTTCAAAATTTGGGAACAATTATTGTGGAAACATCCCAGAATATAAGCCCTATCGAAGATGGTAGAAACCAGAAAGAAATTGACCAAACAGAAGGCAGCTGTGCTCAACAAAGAGCTATGCAGACGTACTCATGTGAGGACATCAAGGCCCCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038070-18-21,18-20-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.685 A=NA C2=0.723
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGATGTGAGTGAAGGCAG
R:
TCTACCATCTTCGATAGGGCT
Band lengths:
106-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: