HsaALTA1002818-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000044459 | CNTLN
Description
centlein [Source:HGNC Symbol;Acc:HGNC:23432]
Coordinates
chr9:17394534-17409473:+
Coord C1 exon
chr9:17394534-17395069
Coord A exon
NA
Coord C2 exon
chr9:17409296-17409473
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
TACTTTTTTCTAAAAAGCAGTGA
3' ss Score
0.96
Exon sequences
Seq C1 exon
AAAAGGTCGAGAAAATTAAAAGAAGGGAATAAAAAATTAATGAAAGAAAATGATTTTCTGAAATCCCTCTTAAAACAGCAACAAGAAGATACAGAGACCAGAGAAAAAGAGCTAGAACAGATAATAAAGGGGAGTAAAGATGTAGAAAAAGAAAATACTGAACTTCAAGTAAAAATCAGTGAGCTGGAGACAGAAGTCACTTCCCTGAGGAGACAAGTGGCAGAAGCTAATGCATTGAGAAATGAAAATGAAGAGCTGATCAACCCAATGGAGAAATCACACCAGTCAGCAGACAGAGCTAAATCCGAGATGGCCACCATGAAAGTGAGATCTGGACGATATGATTGTAAGACAACTATGACCAAGGTTAAATTTAAAGCTGCGAAGAAAAATTGCTCTGTGGGTCGTCACCACACTGTTCTCAATCATTCCATCAAGGTTATGAGCAATGTGTTTGAGAACCTCAGCAAGGACGGCTGGGAGGATGTGAGTGAAAGCAG
Seq A exon
NA
Seq C2 exon
TGATTCTGAAGCACAGACCTCTCAAACTTTGGGAACAATTATTGTAGAAACATCCCAGAAAATAAGTCCTACGGAAGATGGAAAAGACCAGAAAGAAAGTGATCCAACAGAAGACAGCCAAACACAAGGAAAAGAAATAGTACAGACATATTTAAATATAGATGGCAAGACCCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000044459-58-50,58-49-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.656 A=NA C2=0.902
Domain overlap (PFAM):
C1:
PF102244=DUF2205=PD(61.3=21.2),PF0003816=Filament=PD(95.8=76.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAATGTGTTTGAGAACCTCAGC
R:
TGTTCCCAAAGTTTGAGAGGTCTG
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains