HsaEX0016083 @ hg38
Exon Skipping
Gene
ENSG00000044459 | CNTLN
Description
centlein [Source:HGNC Symbol;Acc:HGNC:23432]
Coordinates
chr9:17366617-17409473:+
Coord C1 exon
chr9:17366617-17366717
Coord A exon
chr9:17388162-17388253
Coord C2 exon
chr9:17409296-17409473
Length
92 bp
Sequences
Splice sites
3' ss Seq
TATTATTTATTCTCTACCAGAAC
3' ss Score
8.13
5' ss Seq
AAGGTAGTC
5' ss Score
5.64
Exon sequences
Seq C1 exon
GATGAATCTTGAAGAAGAATTAGATGAACTTAAAGTACATATATCTATTGATAAGGCAGCAATACAAGAATTGAATAGATGTGTGGCAGAGAGAAGAGAAG
Seq A exon
AACAGCTCTTTAGATCTGGTGAAGATGATGAGGTCAAGAGGAGTACTCCAGAGAAGAATGGAAAAGAAATGTTGGAGCAGACATTACAGAAG
Seq C2 exon
TGATTCTGAAGCACAGACCTCTCAAACTTTGGGAACAATTATTGTAGAAACATCCCAGAAAATAAGTCCTACGGAAGATGGAAAAGACCAGAAAGAAAGTGATCCAACAGAAGACAGCCAAACACAAGGAAAAGAAATAGTACAGACATATTTAAATATAGATGGCAAGACCCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000044459_MULTIEX3-4/6=1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.083 A=0.878 C2=0.902
Domain overlap (PFAM):
C1:
NO
A:
PF102244=DUF2205=PU(35.5=71.0),PF0003816=Filament=PU(2.8=12.9)
C2:
NO
Main Skipping Isoform:
ENST00000380647fB1710
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGCAGCAATACAAGAATTGAA
R:
TGGCTGTCTTCTGTTGGATCAC
Band lengths:
169-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development