RnoEX0022483 @ rn6
Exon Skipping
Gene
ENSRNOG00000043151 | Cntln
Description
centlein [Source:RGD Symbol;Acc:1308101]
Coordinates
chr5:103251986-103261158:+
Coord C1 exon
chr5:103251986-103252085
Coord A exon
chr5:103257294-103257385
Coord C2 exon
chr5:103260626-103261158
Length
92 bp
Sequences
Splice sites
3' ss Seq
TATTATTTATTTGCTTCCAGAAC
3' ss Score
8.41
5' ss Seq
AAGGTAGTC
5' ss Score
5.64
Exon sequences
Seq C1 exon
ATGAATCTTCAAGATGAATTGGATGAGCTTAAAATATATATGACTATTGATAAAACAACAATACAGGAATTGAACAGATGCATGGCAGAGAAAAGAGAAG
Seq A exon
AACAACTCTTTAGACACCATGAAGATGCTGGGGTCAAGAAGAGTACTCCAGAGAAGAATGAGAAAGCAATATCGGAGCAGACATTAGAGAAG
Seq C2 exon
GTCATTGAGTTGGAAAATCGGCTAAAATCTTTTGAGAAAAACTCAAGAAAATTAAAAGAAGAGAGTAAGAAATTAAAGAAAGAAAATGATTTCCTGAAATCCCACTTACAACACTATCAAGAAGACTCGGAGAGCAGAGGAAAGGAGCTAGAGAAACTACTGAGAGTGAGCAGCAGTGTAGAACAGGACAAAAGTGAGCTTCAAACAAAAGTCACTGCTCTGGAGAGGGAGGTCACTACGCTGAGGAGACAAGTGGCAAAAGCTAAGGCTTTGAGAGATGAAAACGAAGAGGTGGTGAATCCAGAGGAAAAGGAACACTGCCCAACAGACAAAGCTAAATCTGAGATGGCCACCACAGATGTGAGAGCCCAGCACTGTGACTGCAAGACAACCACTACCAAGGTGAAATTTAAAGCTGCCAAGAAAAAGTGCTCTGTGGGTCGCCACCACACTGTTCTCAATCACTCCGTCAAGGTTATGAGCCATGTGGAGAACCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043151_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.147 A=0.903 C2=0.792
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACAGATGCATGGCAGAGA
R:
TCCTTTCCTCTGCTCTCCGAG
Band lengths:
176-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]