MmuEX6094227 @ mm10
Exon Skipping
Gene
ENSMUSG00000038070 | Cntln
Description
centlein, centrosomal protein [Source:MGI Symbol;Acc:MGI:2443104]
Coordinates
chr4:85033788-85050136:+
Coord C1 exon
chr4:85033788-85033888
Coord A exon
chr4:85046303-85046394
Coord C2 exon
chr4:85049604-85050136
Length
92 bp
Sequences
Splice sites
3' ss Seq
TATTATTTATTTGCTTCCAGAAC
3' ss Score
8.41
5' ss Seq
AAGGTAGTC
5' ss Score
5.64
Exon sequences
Seq C1 exon
GATGACTCTTCAAGATGAATTGGATGAGCTTAAAATGCATATGTCCATTGATAAAACAACAATACAGGAATTGAATAGGTGCATGGCAGAGAAAAGAGAAG
Seq A exon
AACAACTCTTTAGACAGCATGAAGACGCTGAGGTCAAGAAGAGTACTCCAGAGAAGAATGAGAAAGCAATATCGGAAGAGACATTACAGAAG
Seq C2 exon
GTCATTGAGTTGGAAAATCGGCTAAAATCTTTTGAGAAAAACTCAAGAAAATTAAAAGAAGAGAGTAAGAGATTAAAGAAAGAGAATGATTTCCTTAAATCCCACTTAAAACACTATCAAGAAGACTCGGAGGCGAGAGAGAAGGAGCTAGAACAACTACTGAGGGTGAGCAAAGATGTAGAACATGACAAAAGTGAGCTTCAAACAAAAATCACTGCTCTGGAGACAGAAGTCACTACCCTGAGGAGACAAGTGACAGAAGCTAAGGCTTTGAGAGGCAAAGATGAAGAGGTGGTGTGCCCAGAGGAAAGAGCACACCGCCCAACAGACAAAGCTAAATCTGAGATGGCCACCACAGATGTGAGAGCCCGGCGCTGTGACTGCAAGACAGCCACTACCAAGGTGAAATTTAAAGCTGCCAAGAGAAAGTGCTCAGTGGGTCGCCACCACACAGTTCTCAATCACTCCATCAAGGTTATGAGCCACGTGGAGAACCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038070-'31-42,'31-40,33-42
Average complexity
S
Mappability confidence:
90%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.800 A=0.903 C2=0.680
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGCATGGCAGAGAAAAGA
R:
CTAGCTCCTTCTCTCTCGCCT
Band lengths:
176-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types