DreEX0022604 @ danRer10
Exon Skipping
Gene
ENSDARG00000033345 | cntln
Description
centlein, centrosomal protein [Source:ZFIN;Acc:ZDB-GENE-090313-409]
Coordinates
chr1:26187598-26197995:-
Coord C1 exon
chr1:26197910-26197995
Coord A exon
chr1:26190695-26190792
Coord C2 exon
chr1:26187598-26188028
Length
98 bp
Sequences
Splice sites
3' ss Seq
GAGTTTTTCTATTCCTTCAGCAG
3' ss Score
5.92
5' ss Seq
AAGGTGCTC
5' ss Score
3.68
Exon sequences
Seq C1 exon
AGCTAATATGGAGGAGGAACTAAACGCAGCCCTGGACAGAATTGCAGCACAGGAGATCCAAGAGGATCGGCGGGAGGCAGCGCAAG
Seq A exon
CAGAGCTTCTGTTTCGGGAAGTGGCGGAGGAGGAGGTCACAAGGAGCAGCACCCCCATCAAGACAACCATGCGAAGAGTGGAAGAGACTTTTAAGAAG
Seq C2 exon
ATCGAGCAGCTACAAAGTCAAATGGTCTCTCTGGAGAGTGAGATTTTGCGGTTACGAGAAGACAACCGGGCACTGGCCGGTGAACGGGGTGATCTGCAGGCCAGGGTTCAGATGCTGCAGCAAAGCAAGGAGGCAGAAGAGGCCCGGGCCAAAGACGAACGCAACCGACTGATTTCCCAGATGCAGAGCTTTGAGAGAGAGGCAAAGGAGGCTGCGAAAGCTGCTGCCCAGGCCAGACGCAGGCTGCTCAAGCTTCGACAGGAACTGGGCGTCCTCCGAGCAGAGAGAGATTTCCATCGGTCCTCTGCTAGACGCAAGGTGAACAACAAAGCCCCCAGGGTGGATGCCTCCAGCAGAACACACGTGCTTTCGACAGAGAACAGGATGGACAGTCCCGCCAAGGACGACTGGGAGGACATGAGCGCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000033345-'18-18,'18-15,19-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.394 C2=0.674
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCACAGGAGATCCAAGAG
R:
TCTTCTGCCTCCTTGCTTTGC
Band lengths:
183-281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]