HsaEX0016083 @ hg19
Exon Skipping
Gene
ENSG00000044459 | CNTLN
Description
centlein, centrosomal protein [Source:HGNC Symbol;Acc:23432]
Coordinates
chr9:17366615-17395067:+
Coord C1 exon
chr9:17366615-17366715
Coord A exon
chr9:17388160-17388251
Coord C2 exon
chr9:17394532-17395067
Length
92 bp
Sequences
Splice sites
3' ss Seq
TATTATTTATTCTCTACCAGAAC
3' ss Score
8.13
5' ss Seq
AAGGTAGTC
5' ss Score
5.64
Exon sequences
Seq C1 exon
GATGAATCTTGAAGAAGAATTAGATGAACTTAAAGTACATATATCTATTGATAAGGCAGCAATACAAGAATTGAATAGATGTGTGGCAGAGAGAAGAGAAG
Seq A exon
AACAGCTCTTTAGATCTGGTGAAGATGATGAGGTCAAGAGGAGTACTCCAGAGAAGAATGGAAAAGAAATGTTGGAGCAGACATTACAGAAG
Seq C2 exon
GTCACTGAGTTGGAAAATCGGCTGAAATCTTTTGAGAAAAGGTCGAGAAAATTAAAAGAAGGGAATAAAAAATTAATGAAAGAAAATGATTTTCTGAAATCCCTCTTAAAACAGCAACAAGAAGATACAGAGACCAGAGAAAAAGAGCTAGAACAGATAATAAAGGGGAGTAAAGATGTAGAAAAAGAAAATACTGAACTTCAAGTAAAAATCAGTGAGCTGGAGACAGAAGTCACTTCCCTGAGGAGACAAGTGGCAGAAGCTAATGCATTGAGAAATGAAAATGAAGAGCTGATCAACCCAATGGAGAAATCACACCAGTCAGCAGACAGAGCTAAATCCGAGATGGCCACCATGAAAGTGAGATCTGGACGATATGATTGTAAGACAACTATGACCAAGGTTAAATTTAAAGCTGCGAAGAAAAATTGCTCTGTGGGTCGTCACCACACTGTTCTCAATCATTCCATCAAGGTTATGAGCAATGTGTTTGAGAACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000044459-'23-24,'23-22,25-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.057 A=0.880 C2=0.659
Domain overlap (PFAM):
C1:
NO
A:
PF0003816=Filament=PU(2.8=12.9)
C2:
PF0003816=Filament=PD(95.7=75.4)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGTGTGGCAGAGAGAAGAGA
R:
AGCTCTTTTTCTCTGGTCTCTGT
Band lengths:
174-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)