RnoALTA0009594-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000043151 | Cntln
Description
centlein [Source:RGD Symbol;Acc:1308101]
Coordinates
chr5:103260626-103292636:+
Coord C1 exon
chr5:103260626-103261158
Coord A exon
NA
Coord C2 exon
chr5:103292465-103292636
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
TTGTTTTGCTTTTTAAGCAGTGA
3' ss Score
4.24
Exon sequences
Seq C1 exon
GAGAAAAACTCAAGAAAATTAAAAGAAGAGAGTAAGAAATTAAAGAAAGAAAATGATTTCCTGAAATCCCACTTACAACACTATCAAGAAGACTCGGAGAGCAGAGGAAAGGAGCTAGAGAAACTACTGAGAGTGAGCAGCAGTGTAGAACAGGACAAAAGTGAGCTTCAAACAAAAGTCACTGCTCTGGAGAGGGAGGTCACTACGCTGAGGAGACAAGTGGCAAAAGCTAAGGCTTTGAGAGATGAAAACGAAGAGGTGGTGAATCCAGAGGAAAAGGAACACTGCCCAACAGACAAAGCTAAATCTGAGATGGCCACCACAGATGTGAGAGCCCAGCACTGTGACTGCAAGACAACCACTACCAAGGTGAAATTTAAAGCTGCCAAGAAAAAGTGCTCTGTGGGTCGCCACCACACTGTTCTCAATCACTCCGTCAAGGTTATGAGCCATGTGGAGAACCTCAGCAAGGATGGCTGGGAGGACATGAGTGAAGGCAG
Seq A exon
NA
Seq C2 exon
TGATTCTGAAACACAAACCTTTCAAAATTTGGGAACAGTTATTGTGGAAACATCCCAGAATATAAGGCCTATAGAAAATGATGGAAACCAGAAGGAAACTGACCAAACAGAAGACAGCCGTGCTCAACAAGAAGTGCAGACATACTCCTGTGAGGACCTCAAGGCCCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043151-4-6,4-5-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.792 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCCATGTGGAGAACCTCA
R:
TGTTTCCACAATAACTGTTCCCA
Band lengths:
107-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]