MmuALTA0004783-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000006932 | Ctnnb1
Description
catenin (cadherin associated protein), beta 1 [Source:MGI Symbol;Acc:MGI:88276]
Coordinates
chr9:120957759-120960044:+
Coord C1 exon
chr9:120957759-120957880
Coord A exon
chr9:120959785-120959943
Coord C2 exon
chr9:120959944-120960044
Length
159 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
3' ss Seq
CAGCCTTTCTCTCTATACAGCTG
3' ss Score
9.7
Exon sequences
Seq C1 exon
CAACATACGCAGCTGCTGTCCTATTCCGAATGTCTGAGGACAAGCCACAGGATTACAAGAAGCGGCTTTCAGTCGAGCTGACCAGTTCCCTCTTCAGGACAGAGCCAATGGCTTGGAATGAG
Seq A exon
CTGTAGTGTCTGAACGTGCATTGTGATTGGCCTGTAGAGTTGCTGAGAGGGCTCGAGGGGTGGGCTGGTATCTCAGAAAGTGCCTGACACACTAACCAAGCTGAGTTTCCTATGGGAACAGTCGAAGTACGCTTTTTGTTCTGGTCCTTTTTGGTCGAG
Seq C2 exon
GAGTAACAATACAAATGGATTTGGGGAGTGACTCACGCAGTGAAGAATGCACACGAATGGATCACAAGATGGCGTTATCAAACCCTAGCCTTGCTTGTTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006932-62-50,62-49-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0051418=Arm=PD(29.3=29.3)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATACGCAGCTGCTGTCCTA
R:
ACAAGCAAGGCTAGGGTTTGA
Band lengths:
218-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types