MmuALTA0005691-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000033335 | Dnm2
Description
dynamin 2 [Source:MGI Symbol;Acc:MGI:109547]
Coordinates
chr9:21505464-21506399:+
Coord C1 exon
chr9:21505464-21505715
Coord A exon
NA
Coord C2 exon
chr9:21506336-21506399
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
CTTTACTTTCTTTGCAGCAGAAG
3' ss Score
5.11
Exon sequences
Seq C1 exon
CCCCACTCCACAGCGCCGACCTGTGTCCAGTGTGCACCCACCAGGCCGGCCACCTGCAGTGCGGGGTCCTACACCGGGGCCTCCCCTGATTCCTATGCCTGTGGGGGCCACATCCTCCTTCTCAGCACCTCCCATCCCATCCCGGCCTGGACCACAGAGTGTGTTTGCCAACAACGACCCCTTCTCTGCGCCACCTCAGATACCATCTCGGCCAGCACGGATTCCCCCTGGTATCCCTCCAGGAGTGCCCAG
Seq A exon
NA
Seq C2 exon
AAGAGCGCCCGCTGCGCCCAGCCGGCCCACCATTATCCGCCCAGCCGAGCCGTCCCTGCTCGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033335-74-62,74-61-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTCTGCGCCACCTCAGATA
R:
GATAATGGTGGGCCGGCTG
Band lengths:
108-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types