MmuINT0051794 @ mm10
Intron Retention
Gene
ENSMUSG00000033335 | Dnm2
Description
dynamin 2 [Source:MGI Symbol;Acc:MGI:109547]
Coordinates
chr9:21505464-21507754:+
Coord C1 exon
chr9:21505464-21505715
Coord A exon
chr9:21505716-21507422
Coord C2 exon
chr9:21507423-21507754
Length
1707 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
GTCTTTTTCTTTCGTGCCAGGCG
3' ss Score
9.82
Exon sequences
Seq C1 exon
CCCCACTCCACAGCGCCGACCTGTGTCCAGTGTGCACCCACCAGGCCGGCCACCTGCAGTGCGGGGTCCTACACCGGGGCCTCCCCTGATTCCTATGCCTGTGGGGGCCACATCCTCCTTCTCAGCACCTCCCATCCCATCCCGGCCTGGACCACAGAGTGTGTTTGCCAACAACGACCCCTTCTCTGCGCCACCTCAGATACCATCTCGGCCAGCACGGATTCCCCCTGGTATCCCTCCAGGAGTGCCCAG
Seq A exon
GTAAGGCCCACGACCTGCATCCTAGGCTCCCTTTGTGGTATCTTTCACCTTTCCCCCCTTCTGATGGCTTCCAGTGTAGCCCCAACAGGACATAGAACAGCACAGGCATCCCTGCTTGTGTCCTGAGACATTGAGCCCTAAAGGGGCCAACCCCTGCTCAGCCAGTGCCACAGAGCAGTGGACCAGCTGATGCCAGGGTTCCTGCCTGTCCTCTAAGCAGCAGGTGACATGTCTCACTAGCCCTGGGCACCATACCACTGTTGACCCTGCTGAAGTCAGCAATGCCTGGTGAGCCAGGTTCTGGTCTCCACTTCTGAGATCAGTGAGGCAGGCAAGATGGCACAAGTGCTTGCTACCAAGCCTGATGACTTGAGTTCAGTCTCTAGGACCCTCTGATGGAGGGAGAGGACTAGCTCTTCCCAAGGCTGAGAACTTGCCTATAAAACCCAGGCAAACTAGTGACATGGGGATACTAGGAAAGTATCTGGACTTGACATAGTCCCTTGTACCCCCAATCTGGGAGCCCCTCGGGTGGGCTGGAAGGGCTGGGTCCCCATCCTCACCCTGCTTCTGCCCTCACTACCCTCCACCTCCCCGTATCTTTACTTTCTTTGCAGCAGAAGAGCGCCCGCTGCGCCCAGCCGGCCCACCATTATCCGCCCAGCCGAGCCGTCCCTGCTCGACTAGGCTGCAGGGGGCAATGTTCTGGGGGGGTCCTCGTGCACCCACAGTGTAGGACAGTTTTGGTGGTCTGGGCCCTGCTACTTGCCCTCCATGCTGGGACCAGGCTCCCCGTGGGCAAGCCCTGCCCTTTCCCTCCTCGCCCTAGTGGACATGACAATGAAGGGTGAGGAGGCCCACAGCACAGCACATGGGGGCTTTGCACTTTGGGATGAGGAGGAGCTCTGGCTAGCAGAACAGGAACTGCATCCTTGGGACCATCAGGAAAAAAAGGTCCAGGCTAGTGTGGGGGGACTCTTCTGGAGCTCCTCCAGAGCCTTTGTTCTTTCTGGGGTCCAGGAACTGCCCACCTTTCCTAAGGACTCCTCAGGAGTGAGCCAGGCCCAGCAGGTCCAGTGCTGACCCACCTGGCTCAAGTTGTATATATAGAGCTCCTTTGGCCATATTAACCACACAAGCTGAGCCCAGCCCAGGCTCCGCACCCAGAGGTGCCTTTGTGCCTTCCTCAGGCCTGGAGGGCCTCAGCTCTGGCCACCCTCACTCTCCTCAGCCCCGGTTGTGGTTTGGGCTGTATGAACTGGGGAGACATCAGAGGCCTCTTGGCTCCCAACCAGATGTCCCCACAGGGTGGGCCCTGGGTGCCTCTGCAGCCTCGGCTCCCACCGCCTGGATTGACCACTGTTAAGTGCCTGCCTCTGTATATCCTATTAATAAACTAAAATAAAGGGAAGCCCTACTGGTGGCTACGTGTGTGGGCCTTTTGTGTGTGTCCCAGCTCAGGAGATTGAGCACCCCCTCATGAGGCTGCCCACACTCATTTACACGCGTGAGTCTTGTGTCATCTGTTCTGAGCCCCTCTTGTCCCCATCCGTACCAGGCCTCACACACAGTGCTCATGGGAAACAGGAATTCTATCCACCTCTGTGCGATGCTGTGGCCAAGCCCTCCTCCCAGCCCCGCCAGCCACCGGGACCAGGGGACTCAGTTCATTCAGCCATGGTTTATGGTCTTTTTCTTTCGTGCCAG
Seq C2 exon
GCGACCACCTCCATTGGCTCCTGCCCGACCTTTCTTCTGAGCTTCGTGGGAGTGTCCCCCCTTCCTGGCTGCCCTGGCTTGAGGCTAGGTCTGTCCCAAGCTGACATCCCTAAGCCCAGTCACCAGGCACTATTAACTTTCTGACCATAATTTATTGACTCCAGTGCCCAGGACAAATGCCCTCTGTTCCTTGAGGCTCATGGGCCAGCCTTCTCTGAGGCCCTGCACCCAGAGAGAAGGAAGGGGCCTCTCCCAAACCACCTACTAGCTGGCTCCCCTCTGGGCCAAGGGGCCAGGGCTCCTTCCTTTCAAATAAAAGTGACTGTCCTGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033335:ENSMUST00000165766:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTCTGCGCCACCTCAGATA
R:
CAGAGGGGAGCCAGCTAGTAG
Band lengths:
353-2060
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types