MmuINT0051794 @ mm9
Intron Retention
Gene
ENSMUSG00000033335 | Dnm2
Description
dynamin 2 [Source:MGI Symbol;Acc:MGI:109547]
Coordinates
chr9:21309908-21311568:+
Coord C1 exon
chr9:21309908-21310159
Coord A exon
chr9:21310160-21310779
Coord C2 exon
chr9:21310780-21311568
Length
620 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
CTTTACTTTCTTTGCAGCAGAAG
3' ss Score
5.11
Exon sequences
Seq C1 exon
CCCCACTCCACAGCGCCGACCTGTGTCCAGTGTGCACCCACCAGGCCGGCCACCTGCAGTGCGGGGTCCTACACCGGGGCCTCCCCTGATTCCTATGCCTGTGGGGGCCACATCCTCCTTCTCAGCACCTCCCATCCCATCCCGGCCTGGACCACAGAGTGTGTTTGCCAACAACGACCCCTTCTCTGCGCCACCTCAGATACCATCTCGGCCAGCACGGATTCCCCCTGGTATCCCTCCAGGAGTGCCCAG
Seq A exon
GTAAGGCCCACGACCTGCATCCTAGGCTCCCTTTGTGGTATCTTTCACCTTTCCCCCCTTCTGATGGCTTCCAGTGTAGCCCCAACAGGACATAGAACAGCACAGGCATCCCTGCTTGTGTCCTGAGACATTGAGCCCTAAAGGGGCCAACCCCTGCTCAGCCAGTGCCACAGAGCAGTGGACCAGCTGATGCCAGGGTTCCTGCCTGTCCTCTAAGCAGCAGGTGACATGTCTCACTAGCCCTGGGCACCATACCACTGTTGACCCTGCTGAAGTCAGCAATGCCTGGTGAGCCAGGTTCTGGTCTCCACTTCTGAGATCAGTGAGGCAGGCAAGATGGCACAAGTGCTTGCTACCAAGCCTGATGACTTGAGTTCAGTCTCTAGGACCCTCTGATGGAGGGAGAGGACTAGCTCTTCCCAAGGCTGAGAACTTGCCTATAAAACCCAGGCAAACTAGTGACATGGGGATACTAGGAAAGTATCTGGACTTGACATAGTCCCTTGTACCCCCAATCTGGGAGCCCCTCGGGTGGGCTGGAAGGGCTGGGTCCCCATCCTCACCCTGCTTCTGCCCTCACTACCCTCCACCTCCCCGTATCTTTACTTTCTTTGCAGCAG
Seq C2 exon
AAGAGCGCCCGCTGCGCCCAGCCGGCCCACCATTATCCGCCCAGCCGAGCCGTCCCTGCTCGACTAGGCTGCAGGGGGCAATGTTCTGGGGGGGTCCTCGTGCACCCACAGTGTAGGACAGTTTTGGTGGTCTGGGCCCTGCTACTTGCCCTCCATGCTGGGACCAGGCTCCCCGTGGGCAAGCCCTGCCCTTTCCCTCCTCGCCCTAGTGGACATGACAATGAAGGGTGAGGAGGCCCACAGCACAGCACATGGGGGCTTTGCACTTTGGGATGAGGAGGAGCTCTGGCTAGCAGAACAGGAACTGCATCCTTGGGACCATCAGGAAAAAAAGGTCCAGGCTAGTGTGGGGGGACTCTTCTGGAGCTCCTCCAGAGCCTTTGTTCTTTCTGGGGTCCAGGAACTGCCCACCTTTCCTAAGGACTCCTCAGGAGTGAGCCAGGCCCAGCAGGTCCAGTGCTGACCCACCTGGCTCAAGTTGTATATATAGAGCTCCTTTGGCCATATTAACCACACAAGCTGAGCCCAGCCCAGGCTCCGCACCCAGAGGTGCCTTTGTGCCTTCCTCAGGCCTGGAGGGCCTCAGCTCTGGCCACCCTCACTCTCCTCAGCCCCGGTTGTGGTTTGGGCTGTATGAACTGGGGAGACATCAGAGGCCTCTTGGCTCCCAACCAGATGTCCCCACAGGGTGGGCCCTGGGTGCCTCTGCAGCCTCGGCTCCCACCGCCTGGATTGACCACTGTTAAGTGCCTGCCTCTGTATATCCTATTAATAAACTAAAATAAAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033335-Dnm2:NM_001039520:20
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCAGATACCATCTCGGCCA
R:
CAGAGCTCCTCCTCATCCCAA
Band lengths:
347-967
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: