BtaINT0051338 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013362 | DNM2
Description
Bos taurus dynamin 2 (DNM2), mRNA. [Source:RefSeq mRNA;Acc:NM_001099369]
Coordinates
chr7:16521475-16523297:+
Coord C1 exon
chr7:16521475-16521726
Coord A exon
chr7:16521727-16522399
Coord C2 exon
chr7:16522400-16523297
Length
673 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
TGTCTTTATTCTCTTTGCAGCAG
3' ss Score
10.23
Exon sequences
Seq C1 exon
CCCCACTCCGCAGCGCCGGCCCGTATCCAGCGTGCACCCCCCAGGCCGGCCCCCAGCAGTGAGGGGTCCCACCCCAGGGCCACCCCTGATTCCTGTGCCGGTGGGGCCAGCTTCCTTCTCAGCGCCCCCGATCCCATCCCGGCCCGGCCCCCACCCCGGCGTGTTTGCCAACAACGACCCCTTCTCGGCCCCACCTCAGATCCCATCTCGGCCGGCTCGGATTCCACCCGGCATTCCCCCTGGAGTGCCCAG
Seq A exon
GTAAGGCTAGACCCCCTTGCCACCCGCCACCTAGAGACACCCGCCTGTGCCCTGCAGGGAGCAAAGGAGTTACCAGCATCCCTGTGGGGCTCACGGGGAAACTGAGGCCCCGAGAGGCCTAATTCACAGAGCAACGGAGTCCAGGTGACTCCCAAGCTCCCATGCCCATCCTCTACATGAGCACGTGGGCCCCCTTGTAGCTCGGGTCCCTCCCATGGGACCCCTTCTTCTGGTTTTGACCAGTTTCCCTTCTGAGGACACGCACATCAGGCGCTGCCCATCCCCTGCCCTGGCTTGCCCCTCCCTGGCTGCCAGGCTCTTTCTTCCCCTTTTCTCCCATGAGCAACCTGTGGTCCGGAGTGGGCGCAAGTGCTGATGCCCTGGTTGGCTCATTCCTTCCCAGCATCAAAGCAGCCATTGTGTAGCACCCAGATGGGTGATGGCCTTCCTGTACTCGTCGAGGTCAGGGCTTCCCACCACCCCAGCCAAGAACTCAGCCAGCTGTTGTGATGGGCTTGGAAGAGCATTCACCATGCTCTTTAAAGTCTGTAACTTTACTACGGAACATGGGCAATATTTACAAGGGGTGGGGGAGGTGGGGCCTGGGTCCTCGGCCTTGCCCGGCTTCCAGCCTCACTGCCCTCTCCCCCTCCTGTCTTTATTCTCTTTGCAG
Seq C2 exon
CAGAAGACCCCCTGCTGCGCCCAGCCGGCCCACCATTATCCGCCCAGCCGAGCCATCTCTGCTCGACTAGGCTGCAGGGGTTGGGGGTCATGTTCTTGGGAGTCCTCGAGCAGGACCCTCGGTGCAGGAGCTTCGGTGGTCTAAGCCCACCTGCCGCCCCTGGCCCTCCCGTCCCCAGGCGGGACCAGGCTCCCTGCGGGCAGCCCCTGGCTCTTCCCTAACCCTGGCCCCCATCCCCGGCTGGACACAGCACTGAAAGGAGGGCCCCTGGAGCCCCAGAATGAGGGGTGCTGGGGTGTTGCACTTTGGGAGATGGGGTCTCAGGTACCAGAGGAGAGAGCTGCATCTTGAGTGCCATCTTGAAGGAGGGAGCCAGGCTGGTGTGGGGGGTGGGGTTCACCCGGGGGGTCTCTGGCCAGGAAAGCCTGAGTGGACCAGGCCTAAGAAACGGCACCGCAGTGTCCATACCCCATAGGCCTTGCTCTGCTTCTCAGCAGCTGGGGCTCCCAGTGGCAAGCCAGGCCCCGCGGGCCCAGCACTACCTGCCCGCCTGCCCGAGTTGTACATATTCCTTCCTCGGCCGCATTAACTGCACGGCCCAGCCTCGGCTGCCAGAGGTGCCTTCACCAGGTCCGGAACACTCGGCCCCGGCCAACCTCTCTCCTCCCTGGGCGCCCCCTTTCTCTTCCTGGGTCCCCAGGGCAGCCGGGGTTCGAGGCTGAATGGGATGGGGAAGCTTGGGAGGGCCTCTGGGTCCCCACCCGGGCCTCCCCCACGGGTCAGGCTCCGGGCGGCCTCTCCGTGAGCAAAGCTTCTCGCTCGCTCGGTTTGACCACTGTAAGTGCCTGCACTCTGTACCCTATTAATAAACTACAATAAAGGGAAGACGCTTCTGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013362:ENSBTAT00000036123:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGCCAACAACGACCCCTTC
R:
CCTCCTTTCAGTGCTGTGTCC
Band lengths:
352-1025
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]