RnoINT0049850 @ rn6
Intron Retention
Gene
ENSRNOG00000007649 | Dnm2
Description
dynamin 2 [Source:RGD Symbol;Acc:2513]
Coordinates
chr8:22538358-22540032:+
Coord C1 exon
chr8:22538358-22538609
Coord A exon
chr8:22538610-22539223
Coord C2 exon
chr8:22539224-22540032
Length
614 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
TGTCTTTACTTTCTTTGCAGCAG
3' ss Score
9.82
Exon sequences
Seq C1 exon
CCCCACTCCACAGCGCAGACCTGTGTCCAGTGTGCACCCGCCGGGCCGCCCACCCGCAGTGCGGGGCCCCACACCGGGGCCTCCCCTCATTCCTATGCCTGTGGGGGCCACATCCTCCTTCTCGGCACCCCCCATCCCATCCCGGCCTGGACCACAGAATGTGTTTGCCAACAATGACCCCTTCTCTGCGCCACCTCAGATACCGTCTCGGCCAGCACGGATTCCCCCTGGGATCCCTCCAGGAGTGCCCAG
Seq A exon
GTAAGGCCTACAACCTGCATCCTGGGGTCCCTTTGTGGTGACTCTCCCCGCTTCTGATGACTTCCCATGTAGCCCCAATAGGACATAAAATAGAACAGGCACTTCTGCTTGTGCCTTGAGAAACAGCCCCAAAGGGGCCAACCCCTGCTTACTTAGCCAGTGCCACAGAGCAGTGGATCAGCTTATGCCTGGGCTCCTGGCCTGTCTTCCAAGCAGCAGGTTACATGTCTGACTAGCCCTGAGCACCACACCACTGTTGACCCTGCTGACGTTAGCAGTGTCTAGTGAGCCAGGTTCTAGTCTCCAGTTCTGAGATCAGAGAGGCAGACAAGGTGGCACATCTGGTACAAGCACTTGCTACCAAGCCTGATGACCTGCGCTGTCTCCAGATCCCTCTTGGTGGAAGGAGGGGACTAGCTCTTCCCAAGGCAGAGAACTTGCCGATAAAACCCAAGCAAGCACATGGGGATACTAGGAAAATATCTGGATCTGACATACTGCTTTGTACCCTGACTCTGGGAGCACCTTGGGGTGGCTGGAAGGGCTGGGTCCCCATCCTCACCCTGCTTCTGGCCTCACTACCCTCCGCCTCCCTGTCTTTACTTTCTTTGCAG
Seq C2 exon
CAGAAGAGCGCCTGCTGCGCCCAGCCGGCCCACCATTATCCGCCCAGCCGAGCCGTCCCTGCTCGACTAGGCTGCAGGGGACAGTGTTCTGGGGGGGTCCTCGTGTACCTACAGTGGTCTGGGCCCTGCTACTGCCCCCCATGCTGGGACCAGGCTCCCCGTGGGCAAGCCTGCCCTCTCCTCCCTAGCCCTAGTGCACATGATAAGGAGGGAGAGGGTGGGAAGGAGGCCCAAACAAACAGAACTTGGGGGCTTTGCACTTTGGGGCAAGGGGGAGCTCTGGTTAGCAGAACAGAAACTGCACCCTTGGGACCATCTGGAAAGAAAGGTCTAGGCTAGTGGTGGGGAACTCTACATGGGCTCCTCCATACTGTAAGCCTTTGCTCTTTCTGAGGTACAGAACTGTCCACCTTTCCCTAAGGACTCCTCAGGAGTGAGCCAGGCCCAGGAGGTCCAGTGCTGGCCACCCACCTGGCTCAAGTTGTATATATATATATAGCTTCTTTGGCCACATTAACCACACAGCCTGAGCCCAGCCCAGTCTCCACACCCAGAGGTGCCTTTGTGCCTTCCAGGCCTGGAGTGCCTCAGCTCTGGCCTGCCTCTCTCCTCAGCCCCTGTTGTGGTTTGGGCTGTAAGAACTCTGGAGACATCAGGACCTCTTGGCTTCCAACCAGATGTCTCCTACAGGGTGGGCCCTGGTGCCTCTGTACAGATTCTGCTCCCAACGCTTGGATTGACCACTGTTAAGTGCCTGCCTCTGTATATCCTATTAATAAACTAAAATAAAGGGAAGCCCTCTCGTGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007649:ENSRNOT00000010947:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTGCCAACAATGACCCCT
R:
AAAGTGCAAAGCCCCCAAGTT
Band lengths:
354-968
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]