MmuALTA0010403-1/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000028649 | Macf1
Description
microtubule-actin crosslinking factor 1 [Source:MGI Symbol;Acc:MGI:108559]
Coordinates
chr4:123046064-123047174:-
Coord C1 exon
chr4:123047048-123047174
Coord A exon
NA
Coord C2 exon
chr4:123046064-123046075
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATG
5' ss Score
8.73
3' ss Seq
ATTTGTGCATATCAAAGCAGCTA
3' ss Score
1.67
Exon sequences
Seq C1 exon
AATCCTCTCACAGTCTGAAGCAAAAAACCCACGAATCAACCAGCTCTCTGCCCGGTGGCAGCAGGTGTGGCTGTTAGCCCTGGAGCGTCAGCGGAAGCTGAATGATGCCTTGGACAGACTGGAGGAG
Seq A exon
NA
Seq C2 exon
CTATGCCCGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028649-114-113,114-112-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.327 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PU(7.4=16.3)
A:
NA
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: