MmuALTA0013135-3/5 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000024193 | Phf1
Description
PHD finger protein 1 [Source:MGI Symbol;Acc:MGI:98647]
Coordinates
chr17:26936771-26937134:+
Coord C1 exon
chr17:26936771-26936865
Coord A exon
chr17:26937054-26937095
Coord C2 exon
chr17:26937096-26937134
Length
42 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TTGCCTGTCCCCAACCTCAGCAG
3' ss Score
5
Exon sequences
Seq C1 exon
GCCTCGGTGTCTCCACCACCCCCCAGCCCTAACCAGAGCTATGAGGGCAGCAGCGGCTACAACTTCCGGCCCACAGACGCCCGCTGTCTGCCCAG
Seq A exon
CAGCCCTATCCGGATGTTCGCCTCCTTCCACCCTTCTGCCAG
Seq C2 exon
CACTGCAGGGACCTCTGGGGACAGTGAACCCCCAGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024193-20-31,20-30,20-29,20-28,20-27-3/5
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.875 A=NA C2=0.964
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGCCCTAACCAGAGCTAT
R:
TATCTGGGGGTTCACTGTCCC
Band lengths:
112-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types