RnoALTA0028886-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000000480 | Phf1
Description
PHD finger protein 1 [Source:RGD Symbol;Acc:1303205]
Coordinates
chr20:5530653-5531131:+
Coord C1 exon
chr20:5530653-5530747
Coord A exon
chr20:5531093-5531095
Coord C2 exon
chr20:5531096-5531131
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
CTGCCTGTTCCCAACCCCAGCAG
3' ss Score
6.1
Exon sequences
Seq C1 exon
GCCTCAGAGTCTCCACCACCCCCCAGCCCTAACCAGAGCTACCAGGGCAGCAGCGGCTACAACTTCCGGCCCACAGACGCCCGCTGTCTGCCCAG
Seq A exon
CAG
Seq C2 exon
CCCCATCCGGATGTTCGCCTCCTTCCACCCTTCTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000480-17-28,17-27-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCCTAACCAGAGCTACCAG
R:
GAAGGAGGCGAACATCCGGAT
Band lengths:
96-99
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]