MmuALTA0019597-1/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000026854 | Usp20
Description
ubiquitin specific peptidase 20 [Source:MGI Symbol;Acc:MGI:1921520]
Coordinates
chr2:31010166-31011088:+
Coord C1 exon
chr2:31010166-31010613
Coord A exon
NA
Coord C2 exon
chr2:31011025-31011088
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTATCC
5' ss Score
7.91
3' ss Seq
AGCTCCTCTCGTCCCTGCAGCCC
3' ss Score
10.26
Exon sequences
Seq C1 exon
GACACCCAGGAGTTCCTACGCTGCCTAATGGACCAGCTTCATGAGGAGCTCAAGGAGCCCATGGTCGCTGCTGTGGCAGCACTCACCGATGCTCGGGACTCCGATTCCAGTGACACAGATGAGAGGCGTGATGGCGACCGGAGCCCATCAGAGGACGAGTTTCTGTCCTGTGACTCGAGCAGTGACAGGGGTGAGGGTGATGGGCAGGGGCGTGGTGGAGGCAGCTCAAAGGCCGAGATGGAGCTGCTGATCTCAGATGAGGCGGGCCGAGCCATCTCTGAGAAGGAGCGGATGAAGGACCGCAAGTTCTCCTGGGGCCAGCAGCGCACCAACTCAGAGCAAGTGGATGAGGATGCAGATGTGGACACGGCCATGGCGTCCCTTGATGAGCAATCCAGAGAGGCCCAGCCACCATCACCAAGGTCCACCAGCCCCTGCCAGACCCCAG
Seq A exon
NA
Seq C2 exon
CCCTGTTCACCACCACCACGAGGGCCATTCCAAGCTGTCCAGCAGCCCTCCTCGTGCAAGCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026854-32-31,32-30,32-29-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.835 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0044324=UCH=FE(27.5=100)
A:
NA
C2:
PF0044324=UCH=FE(8.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGATGCAGATGTGGACACG
R:
GACAGCTTGGAATGGCCCTC
Band lengths:
139-179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types