RnoALTA0043775-1/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000007710 | Usp20
Description
ubiquitin specific peptidase 20 [Source:RGD Symbol;Acc:1305621]
Coordinates
chr3:9843280-9844244:+
Coord C1 exon
chr3:9843280-9843727
Coord A exon
NA
Coord C2 exon
chr3:9844167-9844244
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTATCA
5' ss Score
7.33
3' ss Seq
AGCTCCTCTCGCCCCTGCAGCCC
3' ss Score
9.47
Exon sequences
Seq C1 exon
GACACCCAGGAGTTCCTACGCTGCCTGATGGACCAGCTTCACGAGGAGCTCAAGGAGCCCATGGTAGCTGCTGTGGCAGCTCTCACTGATGCTCGGGACTCAGATTCCAGTGACACAGATGAGAGGCGTGATGGCGACCGGAGCCCTTCAGAGGACGAGTTTCTGTCCTGTGACTCGAGCAGTGACAGGGGTGAGGGTGATGGGCAGGGCCGTGGTGGAGGCAGCTCAAAGGCTGAGATGGAGCTGCTGATCTCAGACGAGGCGGGCCGAGCCATCTCTGAGAAAGAGCGAATGAAGGACCGCAAGTTCTCCTGGGGCCAGCAGCGCACCAACTCGGAGCAAGTGGATGAGGACGCTGATGTGGACACAGCCATGGCCTCCCTTGACGAACAATCTAGAGAGGCCCAGCCACCGTCACCAAGGCCTACCAGCCCCTGCCAGACCCCAG
Seq A exon
NA
Seq C2 exon
CCCTGTCCACCACCACGAGGGCCATACCAAGCTGTCCAGCAGCCCTCCTCGTGCAAGCCCCGTGAGGATGGGGCCATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007710-23-21,23-20,23-19-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.847 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0044324=UCH=FE(27.6=100)
A:
NA
C2:
PF0044324=UCH=FE(8.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGATGAGGACGCTGATGTG
R:
CTGGACAGCTTGGTATGGCC
Band lengths:
145-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]