MmuALTA1037604-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000054582 | Pabpc1l
Description
poly(A) binding protein, cytoplasmic 1-like [Source:MGI Symbol;Acc:MGI:1922908]
Coordinates
chr2:164043550-164044380:+
Coord C1 exon
chr2:164043550-164043640
Coord A exon
NA
Coord C2 exon
chr2:164044264-164044380
Length
0 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGT
5' ss Score
8.31
3' ss Seq
TTCTCTGTGCTTGCTATAAGCTA
3' ss Score
4.18
Exon sequences
Seq C1 exon
TCTACAGCCCAGGCTGTGTACTACAGTTCTGGCTCCATAACTCCAATGCAACCTGACCCCAGGTGGACAGCCCAGCCACATGGACCTCCAT
Seq A exon
NA
Seq C2 exon
CTACCTGCCCTCCAGCTGCCTCTGTGGTCCAGCCTCTAAGCACGACGCAGCATCCCTGTATCCACCTGAGGGGTGCCAGCCAGGTCTCCAGCCAGGTGCCTCACACGCAGAGAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054582-16-14,16-13-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.613 A=NA C2=0.833
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTCCAATGCAACCTGACCC
R:
CTACTCTCTGCGTGTGAGGCA
Band lengths:
170-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types