MmuALTD0010244-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000017715 | Pgs1
Description
phosphatidylglycerophosphate synthase 1 [Source:MGI Symbol;Acc:MGI:1921701]
Coordinates
chr11:118019610-118024011:+
Coord C1 exon
chr11:118019610-118019732
Coord A exon
chr11:118019733-118019736
Coord C2 exon
chr11:118023405-118024011
Length
4 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCTG
5' ss Score
4.87
3' ss Seq
GGTCTCCATTCGGTCCACAGGAA
3' ss Score
8.88
Exon sequences
Seq C1 exon
CAAGAGCAGCTCTACCTGCGGTCTGGTGTGGTGACCTCCGCAACCTTTGAGCAGCCAGGGCGGCAGGTCAAGCTGTGGGTGAAGATGGTGACCCCGCTAATCAAGAACTTCTTCTGAGAACAG
Seq A exon
GCAG
Seq C2 exon
GAATGGCCTTGATGAAGATGACGGGCATGACTGGGGTCAGATCCTTCAACCGGGCTTCAGCAATGACTCCGGTCTGGGTGTCCCAGCGAGCTCCTGTGGGGACAATGGAGCTGAGGGTCTGGGTGCCCTAGGGGAGGCAGAACCCACTGTTTGGATGCTGACCGTGAAAAAGGGAGGCACGGTAGGGAGAGAGGCCTGGCCTCCAACCTCCCCACTCTTTTCAGAGACAGGCCAGTGACTGGGAGCCATGAAGCGTTCAGGCCAGGTGCCAGGGTCTGAGAGTGCCAAACATGGAGGAGTGTGAACCAAGGACTCCGAGGTGACTCTGCATGCCGTAATGGCTCTGAGGCTGCATCTTCTCAGAGCTTCATCTCAGCCTTCTCAATGTCAGTGGCAGAGAAAACTGACCGCAGCTCAGATCCCAGCAATGTTCCTTCCTGATCCCTCCTGTGTAATGTCTACTCTCTGTGTACATAGGGAATAAGTTATATATAGATGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000017715-38-32,39-32-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF130911=PLDc_2=PD(2.9=12.5)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGGTGACCCCGCTAATCA
R:
GAAGCCCGGTTGAAGGATCTG
Band lengths:
99-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types