Special

MmuALTD0010244-2/2 @ mm9

Alternative 5'ss

Gene
ENSMUSG00000017715 | Pgs1
Description
phosphatidylglycerophosphate synthase 1 [Source:MGI Symbol;Acc:MGI:1921701]
Coordinates
chr11:117880921-117885325:+
Coord C1 exon
chr11:117880921-117881046
Coord A exon
chr11:117881047-117881050
Coord C2 exon
chr11:117884719-117885325
Length
4 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCTG
5' ss Score
4.87
3' ss Seq
GGTCTCCATTCGGTCCACAGGAA
3' ss Score
8.88
Exon sequences
Seq C1 exon
GAGCAAGAGCAGCTCTACCTGCGGTCTGGTGTGGTGACCTCCGCAACCTTTGAGCAGCCAGGGCGGCAGGTCAAGCTGTGGGTGAAGATGGTGACCCCGCTAATCAAGAACTTCTTCTGAGAACAG
Seq A exon
GCAG
Seq C2 exon
GAATGGCCTTGATGAAGATGACGGGCATGACTGGGGTCAGATCCTTCAACCGGGCTTCAGCAATGACTCCGGTCTGGGTGTCCCAGCGAGCTCCTGTGGGGACAATGGAGCTGAGGGTCTGGGTGCCCTAGGGGAGGCAGAACCCACTGTTTGGATGCTGACCGTGAAAAAGGGAGGCACGGTAGGGAGAGAGGCCTGGCCTCCAACCTCCCCACTCTTTTCAGAGACAGGCCAGTGACTGGGAGCCATGAAGCGTTCAGGCCAGGTGCCAGGGTCTGAGAGTGCCAAACATGGAGGAGTGTGAACCAAGGACTCCGAGGTGACTCTGCATGCCGTAATGGCTCTGAGGCTGCATCTTCTCAGAGCTTCATCTCAGCCTTCTCAATGTCAGTGGCAGAGAAAACTGACCGCAGCTCAGATCCCAGCAATGTTCCTTCCTGATCCCTCCTGTGTAATGTCTACTCTCTGTGTACATAGGGAATAAGTTATATATAGATGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000017715-15-19,16-19-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact





	

	
3' UTR





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=NA C2=NA
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF130911=PLDc_2=PD(2.9=12.5)

							
A:
NA

							
C2:
NA

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000121973





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr17:78419546-78419675 
ALTERNATIVE
HsaALTD1005929-1/2
(PGS1)
Human
(hg19)
chr17:76415757-76415758 
Rat
(rn6)
chr10:107025832-107025961 
LOW PSI
RnoALTD0021981-2/2
(Pgs1)
Cow
(bosTau6)
chr19:54409375-54409376 
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
chr18:9771488-9771489 
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
AGATGGTGACCCCGCTAATCA

				
R: 
GAAGCCCGGTTGAAGGATCTG

				
Band lengths: 
99-103

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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