RnoALTD0021981-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000002949 | Pgs1
Description
phosphatidylglycerophosphate synthase 1 [Source:RGD Symbol;Acc:1305052]
Coordinates
chr10:107025832-107030260:+
Coord C1 exon
chr10:107025832-107025957
Coord A exon
chr10:107025958-107025961
Coord C2 exon
chr10:107029621-107030260
Length
4 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCTG
5' ss Score
4.87
3' ss Seq
GGTCTCCATTCGGTCCACAGGAA
3' ss Score
8.88
Exon sequences
Seq C1 exon
GAGCAAGAGCAGCTCTACCTGCGGTCTGGTGTGGTTTCCTCTGCGACCTTTGAGCAGCCAGGTCGGCAGGTCAAGCTGTGGGTGAAGATGGTGACCCCGCTGATCAAGAACTTCTTTTGAGAACAG
Seq A exon
GCAG
Seq C2 exon
GAATGGCCTTGATGAAGATGACGGGCATGACTGGGGTCAGATCCTTCAGCTTTGCTTCAGCAATGACTCCGGTCTGGGTGTCCCAGCGAGCTCCTGTGGGGACAATGGAGCTGAGGGTCTGGGTGCCCCAGGGGAGGCAGAACCCACTGTTTGGAGTGCTGACTGTGAAAAAGGGAGGCACGGTAGGGAGAGAGGCCTGGCCTCCAACCTCCCCACTCTTTTCAGAGACAGGCCAGTGACTGGGAGCCCTGAAGAGTTCAGGCCAGGTGCCAGGGCCTGAGAGTGCCAAACACAGAGGAGTGTGGACCGAGGACTCCGAAGTGACTCGCATGCCGTAACGGTTCTGAGGCTGCATCTTCTCAGAGCTTCATCTCCGCCTTCTCAATGTCAGTGGCAGAGAAAACTGACCGCAGCCTAATTCCAGCAGTGTACCCTCCTGATTCTTCATGTGTAATGTCTACTCTGTGTGTGTACATAGGGATAAGTTATATATATGCACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002949-26-18,27-18-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF130911=PLDc_2=PD(2.9=12.5)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGTCAAGCTGTGGGTGAAG
R:
CCAGTCATGCCCGTCATCTTC
Band lengths:
94-98
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]