Special

MmuALTD0016147-2/2 @ mm9

Alternative 5'ss

Gene
ENSMUSG00000025470 | Zfp511
Description
zinc finger protein 511 [Source:MGI Symbol;Acc:MGI:1917002]
Coordinates
chr7:147223421-147225344:+
Coord C1 exon
chr7:147223421-147223480
Coord A exon
chr7:147223481-147223539
Coord C2 exon
chr7:147225225-147225344
Length
59 bp
Sequences
Splice sites
5' ss Seq
AGGGTACGT
5' ss Score
9.15
3' ss Seq
CACTGCTCTGTTCTCTGTAGCCC
3' ss Score
8.56
Exon sequences
Seq C1 exon
TGCTTGGTTGAAAGCTGCCCAGAGAAGTTCAAGACCAGCCAAGACCGGAAGGATCACATG
Seq A exon
GTGAGGCTACACCTGTACCCTGCGGATTTCCGATTTGATAAGCCCAAGACGAACAGAGG
Seq C2 exon
CCCAGCCATGCCAGCTGCAGCAGACGCAGCAACCAGAGCCCCAACAGATGACAGTGACGCCATGGAGATCTGCTCTGAGCCCGCTGCCCCACCTCCCTGCAGGCGGACCTACAGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025470-6-7,7-7-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact





	

	
Protein isoform when splice site is used (Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.190 A=NA C2=0.671
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF072556=Benyvirus_14KDa=PD(61.4=64.3)

							
A:
NA

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000129154





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000026543
          









    
Other Skipping Isoforms:
NA
  



Associated events







Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr10:135123674-135123792 
HIGH PSI
HsaALTD0007458-2/2
(ZNF511)
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr26:25940393-25940394 
Chicken
(galGal4)
chr6:8905064-8905182 
HIGH PSI
GgaALTD1026310-1/2
(ZNF511)
Chicken
(galGal3)
chr6:10488560-10488561 
Zebrafish
(danRer10)
chr13:24535411-24535535 
HIGH PSI
DreALTD0023206-1/2
(znf511)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
TTGGTTGAAAGCTGCCCAGAG

				
R: 
CTCAGAGCAGATCTCCATGGC

				
Band lengths: 
136-195

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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