DreALTD0023206-1/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000000760 | znf511
Description
zinc finger protein 511 [Source:ZFIN;Acc:ZDB-GENE-030616-621]
Coordinates
chr13:24535156-24535535:-
Coord C1 exon
chr13:24535411-24535535
Coord A exon
NA
Coord C2 exon
chr13:24535156-24535320
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGG
5' ss Score
5.28
3' ss Seq
CATGATAATCACATCAACAGAAC
3' ss Score
4.49
Exon sequences
Seq C1 exon
TATGAGTGCTTGGTTGAAGGATGTGGACTGAAATTCAAAACGAGCAAAGAAAGGAAAGATCATCTAATCAGAACGCATAGCTATCCAGCGGACTTCAGATTTGACAAGTCAAAGAAGATCGGAAG
Seq A exon
NA
Seq C2 exon
AACAACAGAAAAAAAGACTCAACAGAAGAAGGATGCACATATGGAAGTTTCTGCAACCGTTCTGCAACAAGAAAGCTCTGAGTCCATGGATTTTTCGCTGACCCCAGAGCCTGTGGAAACAGAACCAATGCAGGCAGCTAATCTAAAACCACGATACTCATACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000760-3-4,4-4-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.095 A=NA C2=0.768
Domain overlap (PFAM):
C1:
PF138941=zf-C2H2_4=PD(86.2=59.5)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCGGACTTCAGATTTGACA
R:
TGCAGAACGGTTGCAGAAACT
Band lengths:
107-127
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]