MmuALTD0016147-2/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000025470 | Zfp511
Description
zinc finger protein 511 [Source:MGI Symbol;Acc:MGI:1917002]
Coordinates
chr7:140037522-140039445:+
Coord C1 exon
chr7:140037522-140037581
Coord A exon
chr7:140037582-140037640
Coord C2 exon
chr7:140039326-140039445
Length
59 bp
Sequences
Splice sites
5' ss Seq
AGGGTACGT
5' ss Score
9.15
3' ss Seq
CACTGCTCTGTTCTCTGTAGCCC
3' ss Score
8.56
Exon sequences
Seq C1 exon
TGCTTGGTTGAAAGCTGCCCAGAGAAGTTCAAGACCAGCCAAGACCGGAAGGATCACATG
Seq A exon
GTGAGGCTACACCTGTACCCTGCGGATTTCCGATTTGATAAGCCCAAGACGAACAGAGG
Seq C2 exon
CCCAGCCATGCCAGCTGCAGCAGACGCAGCAACCAGAGCCCCAACAGATGACAGTGACGCCATGGAGATCTGCTCTGAGCCCGCTGCCCCACCTCCCTGCAGGCGGACCTACAGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025470-5-9,7-9,8-9-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.215 A=NA C2=0.608
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGTTGAAAGCTGCCCAGAG
R:
CTCAGAGCAGATCTCCATGGC
Band lengths:
136-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types