MmuEX0053392 @ mm10
Exon Skipping
Gene
ENSMUSG00000025470 | Zfp511
Description
zinc finger protein 511 [Source:MGI Symbol;Acc:MGI:1917002]
Coordinates
chr7:140037220-140039445:+
Coord C1 exon
chr7:140037220-140037421
Coord A exon
chr7:140037516-140037640
Coord C2 exon
chr7:140039326-140039445
Length
125 bp
Sequences
Splice sites
3' ss Seq
TGACACTTTATTCTTTGTAGTAC
3' ss Score
5.57
5' ss Seq
AGGGTACGT
5' ss Score
9.15
Exon sequences
Seq C1 exon
GGTGCCTGAGTTCACCTGTCAGGTGGCTGGCTGTTGCCAAGTGTTTGCCGCCATAGAAGACTACCAGCACCACTACCACATGATGCATGGAAACACCTGCTCCTTCTGCAACCGTGCCTTCCCCTCTGGGCATTTGCTGGATGTCCACATCCTGGAATGGCACGACTCTCTGTTTCAGATCCTGGCCCAGAGGCAAGACATG
Seq A exon
TACCAGTGCTTGGTTGAAAGCTGCCCAGAGAAGTTCAAGACCAGCCAAGACCGGAAGGATCACATGGTGAGGCTACACCTGTACCCTGCGGATTTCCGATTTGATAAGCCCAAGACGAACAGAGG
Seq C2 exon
CCCAGCCATGCCAGCTGCAGCAGACGCAGCAACCAGAGCCCCAACAGATGACAGTGACGCCATGGAGATCTGCTCTGAGCCCGCTGCCCCACCTCCCTGCAGGCGGACCTACAGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025470-'4-9,'4-5,7-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.215 C2=0.608
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCCTGAGTTCACCTGTCAG
R:
CACTGTCATCTGTTGGGGCTC
Band lengths:
257-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types