GgaEX1065513 @ galGal4
Exon Skipping
Gene
ENSGALG00000003533 | ZNF511
Description
zinc finger protein 511 [Source:HGNC Symbol;Acc:HGNC:28445]
Coordinates
chr6:8904774-8907091:+
Coord C1 exon
chr6:8904774-8904975
Coord A exon
chr6:8905058-8905182
Coord C2 exon
chr6:8906912-8907091
Length
125 bp
Sequences
Splice sites
3' ss Seq
TCTTCTTTCCTTTCTTTCAGTAC
3' ss Score
11.69
5' ss Seq
GAGGTAACT
5' ss Score
8.77
Exon sequences
Seq C1 exon
GGTGTCTGAGTTTTACTGCCACATCTCCGGCTGCTCTCAGGTGTTCGACACGCTGGAGGGCTACGAGCACCACTACAACGCGCTGCACCGGAACGTCTGCTCCTTCTGCAGGCGCTCCTTCCCCTCGGGGCACCTTCTGGACATCCACATCTCCGAGTGGCACGACTCGCTCTTCCAGATCATGGCTGAGAAGCAGAATATG
Seq A exon
TACAAGTGCTTGGTAGAAGGCTGTGTGGAGAAGTTCAAGAGCAGCAAAGACAGGAAGGATCACTTGGTCACTGTTCACTTATACCCTGCTGACTTCCGATTCGATAGACCAAAGAAAGCGAAGAG
Seq C2 exon
TGGTGCCAAGCATGTGAGCTGTCCCACAGATCATGACGGGAGTGTGCTGATGGATGTCAGCGTGGAGACCTCAGAGCAGCTCCAGGCAGACCACATGGAAGTGGTGCCCAGTGAGAACATGGAGGTCCCTCAGCCTGCAGCTAGCCCTTCACTACCAGAGAAACGTCTCTATAAATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003533-'3-10,'3-6,4-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.664
Domain overlap (PFAM):
C1:
PF0009621=zf-C2H2=WD(100=33.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACGAGCACCACTACAACGC
R:
CACTTCCATGTGGTCTGCCTG
Band lengths:
245-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]