DreEX6061300 @ danRer10
Exon Skipping
Gene
ENSDARG00000000760 | znf511
Description
zinc finger protein 511 [Source:ZFIN;Acc:ZDB-GENE-030616-621]
Coordinates
chr13:24535156-24537288:-
Coord C1 exon
chr13:24537087-24537288
Coord A exon
chr13:24535411-24535535
Coord C2 exon
chr13:24535156-24535320
Length
125 bp
Sequences
Splice sites
3' ss Seq
TTACTAATATTGCTTTTCAGTAT
3' ss Score
8.14
5' ss Seq
AAGGTTTGG
5' ss Score
5.28
Exon sequences
Seq C1 exon
TATCTCTGAGTTCAGGTGTCACATTGCAGGATGCAAACAATTATTCGACACACTGGAAGGATATGAGCACCACTACAATGCATTACATCGAAACGTGTGCTCCAACTGTAAGCGATCGTTTCCATCAAATCGCCTGCTGGAGATCCACATATTGGAGTGGCATGACTCTCTCTTCCAGATCATGGCGGAGAAACAATGCATG
Seq A exon
TATGAGTGCTTGGTTGAAGGATGTGGACTGAAATTCAAAACGAGCAAAGAAAGGAAAGATCATCTAATCAGAACGCATAGCTATCCAGCGGACTTCAGATTTGACAAGTCAAAGAAGATCGGAAG
Seq C2 exon
AACAACAGAAAAAAAGACTCAACAGAAGAAGGATGCACATATGGAAGTTTCTGCAACCGTTCTGCAACAAGAAAGCTCTGAGTCCATGGATTTTTCGCTGACCCCAGAGCCTGTGGAAACAGAACCAATGCAGGCAGCTAATCTAAAACCACGATACTCATACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000760-'2-4,'2-3,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.095 C2=0.768
Domain overlap (PFAM):
C1:
PF0009621=zf-C2H2=WD(100=33.8),PF138941=zf-C2H2_4=PU(6.9=2.9)
A:
PF138941=zf-C2H2_4=PD(86.2=59.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGCTCCAACTGTAAGCGA
R:
TAGCTGCCTGCATTGGTTCTG
Band lengths:
248-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]