HsaEX6091297 @ hg19
Exon Skipping
Gene
ENSG00000198546 | ZNF511
Description
zinc finger protein 511 [Source:HGNC Symbol;Acc:28445]
Coordinates
chr10:135123280-135125345:+
Coord C1 exon
chr10:135123280-135123481
Coord A exon
chr10:135123668-135123792
Coord C2 exon
chr10:135125220-135125345
Length
125 bp
Sequences
Splice sites
3' ss Seq
TGACACGGTCTCCATTTCAGTAT
3' ss Score
8.01
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
Exon sequences
Seq C1 exon
GGTGCCCGCGTTTGCCTGCCAGGTGGCCGGCTGCTGCCAGGTGTTCGATGCCCTGGACGACTACGAGCACCACTACCACACGCTGCACGGAAATGTTTGCTCCTTTTGCAAGCGGGCCTTCCCTTCCGGACACCTGCTGGACGCCCACATCCTGGAGTGGCACGATTCGCTCTTCCAGATCCTGTCTGAGAGGCAGGACATG
Seq A exon
TATCAGTGCTTGGTAGAAGGCTGCACAGAGAAGTTCAAGACCAGCAGAGACCGGAAGGATCACATGGTGAGGATGCACCTGTACCCCGCGGACTTCCGGTTTGATAAGCCAAAGAAAAGCAGAAG
Seq C2 exon
CCCAGCCTCAGCAGAAGCCCCAGGGGACAGTGGAGAGCGGTCAGAAGGGGAGGCCATGGAAATCTGCTCTGAGCCTGTGGCAGCCTCCCCTGCACCGGCAGGTGAGAGGCGGATCTACAGACATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198546-'2-5,'2-3,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.095 C2=0.580
Domain overlap (PFAM):
C1:
PF0009621=zf-C2H2=WD(100=33.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCACGGAAATGTTTGCTC
R:
TCTGTAGATCCGCCTCTCACC
Band lengths:
242-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)