GgaEX1065513 @ galGal3
Exon Skipping
Gene
ENSGALG00000003533 | ZNF511
Description
NA
Coordinates
chr6:10487792-10490468:+
Coord C1 exon
chr6:10487792-10487866
Coord A exon
chr6:10488435-10488559
Coord C2 exon
chr6:10490331-10490468
Length
125 bp
Sequences
Splice sites
3' ss Seq
TCTTCTTTCCTTTCTTTCAGTAC
3' ss Score
11.69
5' ss Seq
GAGGTAACT
5' ss Score
8.77
Exon sequences
Seq C1 exon
GGATGGCGACGTGCAGAGGCACCTGTACCTGCGGGAGGCCCTCACGGGCCGCGCCGAGGAGGCGGAGAGGCCCAG
Seq A exon
TACAAGTGCTTGGTAGAAGGCTGTGTGGAGAAGTTCAAGAGCAGCAAAGACAGGAAGGATCACTTGGTCACTGTTCACTTATACCCTGCTGACTTCCGATTCGATAGACCAAAGAAAGCGAAGAG
Seq C2 exon
TGTGCTGATGGATGTCAGCGTGGAGACCTCAGAGCAGCTCCAGGCAGACCACATGGAAGTGGTGCCCAGTGAGAACATGGAGGTCCCTCAGCCTGCAGCTAGCCCTTCACTACCAGAGAAACGTCTCTATAAATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003533-'0-5,'0-2,2-5=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.920 A=0.000 C2=0.830
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAGGCACCTGTACCTG
R:
CGTTTCTCTGGTAGTGAAGGGC
Band lengths:
186-311
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]