BtaEX0041358 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012416 | ZNF511
Description
Bos taurus zinc finger protein 511 (ZNF511), mRNA. [Source:RefSeq mRNA;Acc:NM_001206234]
Coordinates
chr26:25939171-25941231:-
Coord C1 exon
chr26:25941158-25941231
Coord A exon
chr26:25940395-25940519
Coord C2 exon
chr26:25939171-25939300
Length
125 bp
Sequences
Splice sites
3' ss Seq
TGACACTGTTTCTGCTGTAGTAC
3' ss Score
6.72
5' ss Seq
ACGGTACGT
5' ss Score
11.34
Exon sequences
Seq C1 exon
GACGGAGACGTGCAGAGGCACCTCTACCTCCAGGATGTGATTACGCAGGTGGCTGCGGAGCCGGAGAGGCCCAG
Seq A exon
TACCAGTGCCTGGTGGAGGGCTGCACGGAGAAGTTCAGGACCAGCAGAGACCGGAAGGAGCACCTGGTAACTCATCACCTCTACCCTGCAGATTTCCGCTTTGATAAACCGAGGAAGGGCAGACG
Seq C2 exon
CCTCGCAGGTGTCGACAGAAGCCATCGGGGAGGACTGGGCACCCTCTGAAGGAGACGCCATGGAAGTCTGCTCTGAACAGGCAGAGGCCCACCCAGAACCTCCAAGAGAGAGGCGGGTCTACAGCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012416_MULTIEX1-2/2=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.167 C2=0.826
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACCTCTACCTCCAGGATGT
R:
CTGTGGCTGTAGACCCGCC
Band lengths:
187-312
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development