RnoEX0101446 @ rn6
Exon Skipping
Gene
ENSRNOG00000018272 | Zfp511
Description
zinc finger protein 511 [Source:RGD Symbol;Acc:1308585]
Coordinates
chr1:212360144-212362633:+
Coord C1 exon
chr1:212360144-212360345
Coord A exon
chr1:212360432-212360556
Coord C2 exon
chr1:212362436-212362633
Length
125 bp
Sequences
Splice sites
3' ss Seq
TGACACCTTATTCTTTGTAGTAC
3' ss Score
5.02
5' ss Seq
AGGGTACGT
5' ss Score
9.15
Exon sequences
Seq C1 exon
GGTGCCCGAGTTCACCTGTCAGGTGGCTGGCTGTTGCCAAGTGTTTGCCGCCATAGAAGACTACCAACACCACTACCACATGATGCATGGAAATACCTGCTCCTTCTGCAACCGCGCCTTCCCCTCTGGGCATTTGCTGGATGTCCACATCCTGGAATGGCACGATTCTCTATTTCAGATCCTGGCCCAGAGGCAAGACATG
Seq A exon
TACCAGTGCTTGGTTGAAAGCTGCCCAGAGAAGTTCAAGACCAGCCAAGACCGGAAGGATCACATGGTGAGGCTACACCTGTACCCTGCGGATTTCCGGTTTGATAAGCCCAAGACAAACAGAGG
Seq C2 exon
GGAAAAAAATGGTGTCTTCCTTGGAAGCTTCATACTGGAAGCCGGTAGAAGTGTTGCTCACTGCTCTGTTCTCTGTAGCCCAGCCATGCCAGCTGCTGCAGACACAGCAGCCAGAGCCCTGAGAGATGACAGCGATGCCATGGAGGTCTGCTTGGAACCTGCTGCCCCACCTCCCTGCAGAAGGACCTACAGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018272_MULTIEX1-3/3=2-C2
Average complexity
S*
Mappability confidence:
75%=75=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.095 C2=0.390
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACATCCTGGAATGGCACGAT
R:
TGTAGGTCCTTCTGCAGGGAG
Band lengths:
248-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]