MmuINT0179354 @ mm10
Intron Retention
Gene
ENSMUSG00000025470 | Zfp511
Description
zinc finger protein 511 [Source:MGI Symbol;Acc:MGI:1917002]
Coordinates
chr7:140037516-140039445:+
Coord C1 exon
chr7:140037516-140037640
Coord A exon
chr7:140037641-140039325
Coord C2 exon
chr7:140039326-140039445
Length
1685 bp
Sequences
Splice sites
5' ss Seq
AGGGTACGT
5' ss Score
9.15
3' ss Seq
CACTGCTCTGTTCTCTGTAGCCC
3' ss Score
8.56
Exon sequences
Seq C1 exon
TACCAGTGCTTGGTTGAAAGCTGCCCAGAGAAGTTCAAGACCAGCCAAGACCGGAAGGATCACATGGTGAGGCTACACCTGTACCCTGCGGATTTCCGATTTGATAAGCCCAAGACGAACAGAGG
Seq A exon
GTACGTGAGGGACCCAGTTGTGACTGTCCCCAGTCTTAAGCCTGGGAACAGACACTGTAATCAAATCTTAGTGAGGACACTAACAGAGCAGAGGGTGAGGTGCTAGCAAGTGCTTGTGCTGGTGTGGTGTCTTCCATGGCCCTCTGATGCTACCAGCAGGGCACTGGGGACTGTCCCAAGTGTGTGTGCTTTTCCCATGGAATCCCCTGTGTGCTCTTCACACTTCTCCCATGGAACCCCCTAGGGTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCTTACTTTTATAAACTTGCCAACAAAGCTGTCTGTTAGCATGACTGTTTAGACTGCCCTAAGGAGAATAATTCCTGGAATAACTTTTAGAATAATGCTTCTTTGCTTCCTTTAAAAAGTGACTCCTTTCCATGAACTCCCATGATCCTTTGGTAGTGCATTGATGAGGTGACAGCTCATTCTGTGAAGTGCATAAGTTTGCGGTTCAATCCCTAGCACCTACCTTAAAAATCCAAGTATGGCGTGCACCATACAATGCTAGCACCATGAAAGTGAAGACAGAGAGTTCTGGAGTTAGGCCAGCCAGCTTAGCCTCATCTGTGAGCTCTGAGTCCCAGTGAGAGACCTCGTCTCATCCAGGTAGATGGCTCCTAGGAAATGGCACCTGAGGTTGTCTTTGGTCCTCAACATATAAACGTACACCACACACATGAGTATATACACCTAAGCACACACACAAAGACAAACAAATAAAATGTGTCTGAATTGGAGTCTGTTTTCAATCATGCAGAGCCCCATTGCACGGTGGAGTGCTTCAGGAGATCTGAGTCTTCAATACTTGTCGATTTCTACAGAGCTGGATTAGCTCATTGGAAGTAGTGGCAAGAATCTATGTTATCTAGTTGATTTTAGTAAATCTCTCCCTCGTGGAAAGACATTTGGGGGCTGGGCTATAACTCAGTAGTAGAGTTTGGTTCCCAATATCCCCCTCAGATGGGTTATAACTGCTTGTCATTTCAATTGGATCCCTCCAAGGGATCCGCCTTTTTCTTCTAGGTATCCACATACGTGGCACCCAGAAGCGCACACACACATACACATAAATACCAAAATTTTAAAAACCTTAAAGAAAAATCCTAGTGGGGGCTGAGTGTAGTGGCGTGTGCCTTTAATCCCAGGACTTGGAAAGCAGAGGTAGGCAAATCTCAGTTTAGAGGCCAGCCTGGTCTGTGTACCACGTTCCTCTCCTTTTGGCTGGGGGAGGGGGAGTTTGGGGTAGGGGAGGTATCTCTCTGTGAATATGTGTAGCCCTGGCTCACCTGGAACTCACTCTGTAGACCTGGCCAGCCTGTAGAACTCCAGAGATCACCTGTCTCTTCCTCCCTGGTGCTGGGATTAAAGGCGAGTGCTACTGCCCCCGGCCGCAGCTGTCTTCTCAGAGGAGGAATGAGGGTCGTTATACTTAAATTGATAGGTTATCAGACTTAGTTATAGAAACACAACCATTTCCAGAAGTATTCATCTCTTTCCACTAGCCTGAACATTTCATTTTAACAGTAGATGGTGACAAAATAGTAAAAAACCCAACATTTTTGCAGGGGAAAAAGATAGTGTCTTCCTTGAAAGTTTCGTACCAGGGAGCCAGGTGGAGGTGTTGCTCACTGCTCTGTTCTCTGTAG
Seq C2 exon
CCCAGCCATGCCAGCTGCAGCAGACGCAGCAACCAGAGCCCCAACAGATGACAGTGACGCCATGGAGATCTGCTCTGAGCCCGCTGCCCCACCTCCCTGCAGGCGGACCTACAGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025470:ENSMUST00000168194:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.215 A=NA C2=0.608
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGTTGAAAGCTGCCCAGAG
R:
CTGTGACTGTAGGTCCGCCTG
Band lengths:
236-1921
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types