DreINT0181451 @ danRer10
Intron Retention
Gene
ENSDARG00000000760 | znf511
Description
zinc finger protein 511 [Source:ZFIN;Acc:ZDB-GENE-030616-621]
Coordinates
chr13:24535156-24535535:-
Coord C1 exon
chr13:24535411-24535535
Coord A exon
chr13:24535321-24535410
Coord C2 exon
chr13:24535156-24535320
Length
90 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGG
5' ss Score
5.28
3' ss Seq
CATGATAATCACATCAACAGAAC
3' ss Score
4.49
Exon sequences
Seq C1 exon
TATGAGTGCTTGGTTGAAGGATGTGGACTGAAATTCAAAACGAGCAAAGAAAGGAAAGATCATCTAATCAGAACGCATAGCTATCCAGCGGACTTCAGATTTGACAAGTCAAAGAAGATCGGAAG
Seq A exon
GTTTGGTGTTAATACAGAATGTCAGTTTTGTCATTACATTTTGGCTTTTTTATTATGTGCTAATTTTAAGCATGATAATCACATCAACAG
Seq C2 exon
AACAACAGAAAAAAAGACTCAACAGAAGAAGGATGCACATATGGAAGTTTCTGCAACCGTTCTGCAACAAGAAAGCTCTGAGTCCATGGATTTTTCGCTGACCCCAGAGCCTGTGGAAACAGAACCAATGCAGGCAGCTAATCTAAAACCACGATACTCATACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000760:ENSDART00000000831:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.095 A=NA C2=0.768
Domain overlap (PFAM):
C1:
PF138941=zf-C2H2_4=PD(86.2=59.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCGGACTTCAGATTTGACA
R:
TAGCTGCCTGCATTGGTTCTG
Band lengths:
181-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]