GgaINT0040849 @ galGal3
Intron Retention
Gene
ENSGALG00000003533 | ZNF511
Description
NA
Coordinates
chr6:10488435-10490468:+
Coord C1 exon
chr6:10488435-10488559
Coord A exon
chr6:10488560-10490330
Coord C2 exon
chr6:10490331-10490468
Length
1771 bp
Sequences
Splice sites
5' ss Seq
GAGGTAACT
5' ss Score
8.77
3' ss Seq
CCCACAGATCATGACGGGAGTGT
3' ss Score
-17.03
Exon sequences
Seq C1 exon
TACAAGTGCTTGGTAGAAGGCTGTGTGGAGAAGTTCAAGAGCAGCAAAGACAGGAAGGATCACTTGGTCACTGTTCACTTATACCCTGCTGACTTCCGATTCGATAGACCAAAGAAAGCGAAGAG
Seq A exon
GTAACTGCAGAACAGCAGCAGTTCTCTGCTGTCCCACTCCTATCTGTAGTACACATGTTGCTATCTCAAGAGCCCTGTGGTGAAGTTTTCTGCTTCTTGCAGGAATAGGTATACATGTGGGGCTTCATGTGACAATGTTTTGCCTTCCCCTGGTGTGTCTTCATTCTGTCCCTCTGTGCTGTTTCAAGTCCAGCACCTCTCTGTGTCACTGTGTGTGTTTCCTGCTTTCTTTCCAAGTCTTTGCAATATTCCTACTCCCAAAAAGTGTGAGTAGAGCATAAGGAGGCTTTGTAAACCTGGTAGATAGCTTTCTCTTCTGGCCACTCATTCAAAGAGTTATGTCATAGAATCATCTGAATAGGAAGGGACCTTTAAGGGCCATCTGGTGCAACTCCTCTGCAGTGAACGGGGACACTCACAGCTCCATCAGGTGCTCAAAGCCCCATCCAGCCTGGCCTTGAATGTCTCCAGTGATGAGGTACCACCACCTTACTGGGCTTGTAACAGTTTTTCCGTACCTTTATTGTAAAAAGCCTTTTTCCTTCTATGTGATCTAAATCTCCCCTATTTTAGCTTGGAACCATTGTCCCGTCACAACATTGTCCCTTTTTCCCATCACACAGCCCCTGCTAAAGAGTGTACCTTCTTTCTTACAGCCCCCCTTTAGATACTGACAGGCCACTCTGAGGTCTCTCCTGTGCCTTCTCCTCTCTGGGCTGAACAGCCCCAGCTCTCAGTTTGTCCTGACAGGGGAGGTGTTCCATCCCTTGGATCATTTGTGTGGCCCTCCTCTGGTCGCACTCCAGCAGGCTCATGTCTCTACTGCTTTTTCCAAGCACTGCTTTTGCTATGCTGTCATCATTTCAAGCGCAACAGAGCTCTTCCTCCTCTTTCAGGGAGAAAGAAAAACAACTCCATTTAAGATAAGGAGAGATAACAAATTTATTACAAATGGTAAAAGAATGTGAGATAATAATAAGAAAGAGAGTTAAAATTAATAATTCAAATGGGAACAAGAAGAAGGCAATGACTGTGCTGCTTGCTGCATTGCTGTCACCCAGAATTGGGGCACATGTGGAGGCTCTTGGGAACTGCAGTACATCTCAGTGTGTCTTCCTCTTGGAGAGTCAGAACTCACCTGAGACTTACTAAAAATCCAGGAAGCACAGCTCCACAGCACACTGTGCCTCTGCACCTAGCAGCCTGTCCCGTGATGTCATGATATGGAATACTGATATAACCAGGACATAGACAGAGAATACAGGCACTGATGTTTCACAGCCTTCAGTGACACGGAGGATGGGATGGTGAGAAAATTCCTTGCCCAGCAAAGTGGTGCAGCCCTACCACAGGTAACCAGTGGGACTGGGAGTTGCAGAGCTTGCTCAGGTAACCTGCTTGTACCATCACCTATCTACAGCAGAGGGCTGGACTGGAGGTGCTGTCCAGCCTCATTTGGGAGCCCATTCATACATTAAGTGTTATGGGTTGAAGAGTGACATTTAGGAACTGAGCTGTGTGCTATAATGCAGTAACACTGAATACTTTTGCTTATCTCTCTGTCAGCTTTTGCCCTGCGGCAGGTGTTTTGTGCAGCCAGATCTTGGTGCCTCTTTCATGCAGTAACTCCCCCAGACCTCATGTGACCTTTTCAAAATCCCTTTCATTTCCTTTGCTCCACGCTTGCATGTCAGCTGCTGAGAAAGGATGTCACGTTTTGTTTCTGCAGTGGTGCCAAGCATGTGAGCTGTCCCACAGATCATGACGGGAG
Seq C2 exon
TGTGCTGATGGATGTCAGCGTGGAGACCTCAGAGCAGCTCCAGGCAGACCACATGGAAGTGGTGCCCAGTGAGAACATGGAGGTCCCTCAGCCTGCAGCTAGCCCTTCACTACCAGAGAAACGTCTCTATAAATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003533:ENSGALT00000005587:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.830
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGTGCTTGGTAGAAGGCTGT
R:
CGTTTCTCTGGTAGTGAAGGGC
Band lengths:
246-2017
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]