BtaINT0165611 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012416 | ZNF511
Description
Bos taurus zinc finger protein 511 (ZNF511), mRNA. [Source:RefSeq mRNA;Acc:NM_001206234]
Coordinates
chr26:25939171-25940519:-
Coord C1 exon
chr26:25940395-25940519
Coord A exon
chr26:25939306-25940394
Coord C2 exon
chr26:25939171-25939305
Length
1089 bp
Sequences
Splice sites
5' ss Seq
ACGGTACGT
5' ss Score
11.34
3' ss Seq
TCAGCCTCTGTCTTCCCCAGCCC
3' ss Score
8.52
Exon sequences
Seq C1 exon
TACCAGTGCCTGGTGGAGGGCTGCACGGAGAAGTTCAGGACCAGCAGAGACCGGAAGGAGCACCTGGTAACTCATCACCTCTACCCTGCAGATTTCCGCTTTGATAAACCGAGGAAGGGCAGACG
Seq A exon
GTACGTGGGTGCTCGAGGAAGCCGCCTTCTGAGCTCAGCAGGCCTGAGAGTGTGCGGACTCAGAGGCTGTGGACGCCCTCGTGCAGCACCCCTGACACCTAACGTCACATTTAGTTGTGGGTTAACCCTGGGAGTCAGGAGTTACTAACCGAGAGGGGTGGAGCAGGTGGAGGTGGTTTGTGTGTGGCCACTCTGTCTGTAAGGAGGACAAGAAGGGGGAGCTGCTTTGCTGGGTCTGTGTGGGCGGTGGCTGTGGTGCCGCCATGGGGTCTGCTGGGGCCCCTCTGAGCTCAGGCTTCGCCTTTGCCGCCCCCCCATCACCTCTCCATCCTCACACGGGCTTTGGGGGGTTTGTCCCAGGCCATGAGCCATTTCCCGCACATGGAGCCCTTTGGCTTTTCATTTGTGCCATCCATTTACAAGCTTGACGACAGAGCTGTGTAATATTGTTCAGCATGCACTGTGGGAAGTGCCCCTGGAAACTGCCCTAAAGTTCGTGTTTTCTTTGCCTTTTCATTAACTTGTTTTCTCAGGGGAAGCTTTGTAACCATCTAAAGATTGCATTGATTGAAATCATTTTAGACTAAATTGTTGTCCCCAGGTAGGACTTTGTTGTTCAAAGTAGAATAATCAGGAAAACCCACTTCAGTATGGGAGATTTTTCTAAGACCTTGAGTATAACATAACTCCTTCCTTTCCAAGGAATCACTTTAAGGAGAAAAATCATGCAGTGCTGGATTGAGACAGTGGTGTTAAGGAGGAGAAGCTCAGTATTGTCTGACTGGCTTTAGTGAATTTCTCACTTAATTGTTGTGGAAAGACACTTGGTACCATCGATAGTCATTTACCACATGACACCATAAAGGTAGTAGTTTAAAAGACGAAGCGTGACTGTTATACCTAAATTCATAAAACGTGGTGTATGTCGTATTAACCGTCACCTCTCTTTGTCCTGGAATTCCAGTAGCCTGGAATTACTCTGACAAAACAGCCATAAACAGCCAAAACAGCTTTGCAAGTTCAGTCCTGGGGGAAGGTGGGGCTGCAGGAGCTGGCCCCGGGAGAGCGCTCAGCCTCTGTCTTCCCCAG
Seq C2 exon
CCCAGCCTCGCAGGTGTCGACAGAAGCCATCGGGGAGGACTGGGCACCCTCTGAAGGAGACGCCATGGAAGTCTGCTCTGAACAGGCAGAGGCCCACCCAGAACCTCCAAGAGAGAGGCGGGTCTACAGCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012416:ENSBTAT00000016475:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=NA C2=0.826
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTGCCTGGTGGAGGG
R:
GGCTGTAGACCCGCCTCTC
Band lengths:
254-1343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]